RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 LRRFIP1Q32MZ4 808 aaKnown RBP12.72□□□□□ -0.37
CLIP1-210ENST00000538120 TTLL5Q6EMB2 1281 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 MPHOSPH8Q99549 860 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 R3HCC1Q9Y3T6 440 aaKnown RBP12.72□□□□□ -0.37
CLIP1-210ENST00000538120 AFF2P51816 1311 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 STX6O43752 255 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 UQCRFS1P1P0C7P4 283 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 ZSCAN22P10073 491 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-210ENST00000538120 ADD2P35612 726 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 WASHC4Q2M389 1173 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 SRP68Q9UHB9 627 aaKnown RBP12.72□□□□□ -0.37
CLIP1-210ENST00000538120 NARFQ9UHQ1 456 aa12.72□□□□□ -0.37
CLIP1-210ENST00000538120 NOL7Q9UMY1 257 aaKnown RBP12.72□□□□□ -0.37
CLIP1-210ENST00000538120 E7EWF7 191 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 EXOSC10Q01780 885 aaKnown RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 SF3B3Q15393 1217 aaKnown RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 Q6ZUG5 572 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 RNF214Q8ND24 703 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 CCNL1Q9UK58 526 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 ARAP2Q8WZ64 1704 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 GTPBP6O43824 516 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 SLC5A1P13866 664 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 IGHMBP2P38935 993 aaKnown RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 FOXD4L6Q3SYB3 417 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 SLC10A5Q5PT55 438 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 MEX3CQ5U5Q3 659 aaKnown RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 FOXD4L3Q6VB84 417 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-210ENST00000538120 MTMR6Q9Y217 621 aa12.71□□□□□ -0.37
CLIP1-210ENST00000538120 ATRNO75882 1429 aa12.71□□□□□ -0.38
CLIP1-210ENST00000538120 CHRNDQ07001 517 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 LRSAM1Q6UWE0 723 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 BICDL1Q6ZP65 573 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 DHX32Q7L7V1 743 aaKnown RBP12.7□□□□□ -0.38
CLIP1-210ENST00000538120 LRRC2Q9BYS8 371 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 SCN7AQ01118 1682 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 TCRBV5S4A2TA0A5A2 114 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 GNPATO15228 680 aa12.7□□□□□ -0.38
CLIP1-210ENST00000538120 TTF1Q15361 905 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-210ENST00000538120 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-210ENST00000538120 GPAA1O43292 621 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 RAD21O60216 631 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 F13A1P00488 732 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 FGAP02671 866 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 RASGRF1Q13972 1273 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 SLC9C2Q5TAH2 1124 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 SPATA5Q8NB90 893 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 FBXO22Q8NEZ5 403 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 AGXT2Q9BYV1 514 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLIP1-210ENST00000538120 WWC3Q9ULE0 1092 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 MKRN3Q13064 507 aaKnown RBP12.69□□□□□ -0.38
CLIP1-210ENST00000538120 STK3Q13188 491 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 UBE3CQ15386 1083 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 ZSCAN25Q6NSZ9 544 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 SEPT12Q8IYM1 358 aa12.69□□□□□ -0.38
CLIP1-210ENST00000538120 ARHGEF1Q92888 912 aaKnown RBP12.69□□□□□ -0.38
CLIP1-210ENST00000538120 PDE6AP16499 860 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 BCAMP50895 628 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 HS1BP3Q53T59 392 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 KCTD17Q8N5Z5 321 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 BRF1Q92994 677 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 GTF3C6Q969F1 213 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 PDCL3Q9H2J4 239 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 ZNF532Q9HCE3 1301 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 WTIPA6NIX2 430 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-210ENST00000538120 ZNF500O60304 480 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-210ENST00000538120 IDH1O75874 414 aaKnown RBP12.68□□□□□ -0.38
CLIP1-210ENST00000538120 CDC5LQ99459 802 aaKnown RBP12.68□□□□□ -0.38
CLIP1-210ENST00000538120 GDPD2Q9HCC8 539 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 CTNNA3Q9UI47 895 aa12.68□□□□□ -0.38
CLIP1-210ENST00000538120 ZNF592Q92610 1267 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 TRPC5Q9UL62 973 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-210ENST00000538120 ZKSCAN5Q9Y2L8 839 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 RTCBQ9Y3I0 505 aaKnown RBP12.67□□□□□ -0.38
CLIP1-210ENST00000538120 LAMA4Q16363 1823 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 LY75O60449 1722 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 HAND2P61296 217 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 ILDR1Q86SU0 546 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-210ENST00000538120 USP48Q86UV5 1035 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 ANKRD18AQ8IVF6 992 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 TMEM87AQ8NBN3 555 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 RGS22Q8NE09 1264 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 CELF1Q92879 486 aaKnown RBP12.67□□□□□ -0.38
CLIP1-210ENST00000538120 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 BSDC1Q9NW68 430 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-210ENST00000538120 FAM13BQ9NYF5 915 aa12.67□□□□□ -0.38
CLIP1-210ENST00000538120 JAK2O60674 1132 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 PFKFB2O60825 505 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 GADD45BO75293 160 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-210ENST00000538120 ZPR1O75312 459 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 SCRN1Q12765 414 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 CHST3Q7LGC8 479 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 MS4A4AQ96JQ5 239 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 NBPF3Q9H094 633 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 LRRC4BQ9NT99 713 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 CNPY2Q9Y2B0 182 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 MYH7P12883 1935 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 SBF2Q86WG5 1849 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 APOBRQ0VD83 1088 aa12.66□□□□□ -0.38
CLIP1-210ENST00000538120 IMMTQ16891 758 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms