RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 NALCNQ8IZF0 1738 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 PALM3A6NDB9 673 aaPredicted RBP4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 SELPP16109 830 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 EVA1CP58658 441 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 CLDN10P78369 228 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 MBTPS1Q14703 1052 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 RGL3Q3MIN7 710 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 FOXD4L6Q3SYB3 417 aaPredicted RBP4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 HDGFL1Q5TGJ6 251 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 SHISA2Q6UWI4 295 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 FOXD4L3Q6VB84 417 aaPredicted RBP4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 BTLAQ7Z6A9 289 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 POM121Q96HA1 1249 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 HINFPQ9BQA5 517 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 PRDM11Q9NQV5 511 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 SLC6A14Q9UN76 642 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 LAMC1P11047 1609 aa4.53□□□□□ -1.68
CHMP4A-208ENST00000534106 POM121CA8CG34 1229 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 M0R2N6 131 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 ATP9BO43861 1147 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 H2AFB1P0C5Y9 115 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 H2AFB2P0C5Z0 115 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 CCINQ13939 588 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 COL13A1Q5TAT6 717 aaPredicted RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 PLEKHM2Q8IWE5 1019 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 ZNF526Q8TF50 670 aaPredicted RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 SCG3Q8WXD2 468 aaKnown RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 LENG1Q96BZ8 264 aaPredicted RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 HIRIP3Q9BW71 556 aaPredicted RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 EFCC1Q9HA90 598 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 DNAJB12Q9NXW2 375 aaKnown RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 PTPN23Q9H3S7 1636 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 HFM1A2PYH4 1435 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 TNS3Q68CZ2 1445 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 VPS8Q8N3P4 1428 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 SBNO1A3KN83 1393 aa4.52□□□□□ -1.69
CHMP4A-208ENST00000534106 CPB1P15086 417 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 EPB42P16452 691 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 NFKB1P19838 968 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 RASA1P20936 1047 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 AFF1P51825 1210 aaKnown RBP4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 HIRAP54198 1017 aaPredicted RBP4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 LRP8Q14114 963 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 SLC15A2Q16348 729 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 FAM35AQ86V20 835 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 NLGN2Q8NFZ4 835 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 ARXQ96QS3 562 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 TECPR2O15040 1411 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 KIAA0232Q92628 1395 aa4.51□□□□□ -1.69
CHMP4A-208ENST00000534106 PRR36Q9H6K5 1346 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 CCDC144AA2RUR9 1427 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 ZBTB7CA1YPR0 619 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 PLSCR1O15162 318 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 YBX3P16989 372 aaKnown RBP eCLIP4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 SEC13P55735 322 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 PCSK7Q16549 785 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 TXNRD1Q16881 649 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 CFAP70Q5T0N1 1121 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 MSL1Q68DK7 614 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 ELMSAN1Q6PJG2 1045 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 KRT25Q7Z3Z0 450 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 FMR1NBQ8N0W7 255 aaPredicted RBP4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 SIX5Q8N196 739 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 TCP11L2Q8N4U5 519 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 MARCH10Q8NA82 808 aaPredicted RBP4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 GAS2L2Q8NHY3 880 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 PRAM1Q96QH2 718 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 GSX2Q9BZM3 304 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 STK32BQ9NY57 414 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 E9PCH4 1651 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 NEXMIFQ5QGS0 1516 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 ARHGEF10O15013 1369 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 PARD3Q8TEW0 1356 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 USP32Q8NFA0 1604 aa4.5□□□□□ -1.69
CHMP4A-208ENST00000534106 RPGRIP1LQ68CZ1 1315 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 HYAL3O43820 417 aaPredicted RBP4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 HSPA6P17066 643 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 IREB2P48200 963 aaKnown RBP4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 HTRA3P83110 453 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 DNAJC5GQ8N7S2 189 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 NGDNQ8NEJ9 315 aaKnown RBP4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 VTI1AQ96AJ9 217 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 C2orf49Q9BVC5 232 aaPredicted RBP4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 MTFR1LQ9H019 292 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 ABCC11Q96J66 1382 aa4.49□□□□□ -1.69
CHMP4A-208ENST00000534106 ACIN1Q9UKV3 1341 aaKnown RBP4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 PCNTO95613 3336 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 TGFBR3LH3BV60 316 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 C21orf2O43822 256 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 LGR5O75473 907 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 FLIIQ13045 1269 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 RTN1Q16799 776 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 ZNF827Q17R98 1081 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 WFDC8Q8IUA0 241 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 STAG2Q8N3U4 1231 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 ADAMTS19Q8TE59 1207 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 WFDC12Q8WWY7 111 aa4.48□□□□□ -1.69
CHMP4A-208ENST00000534106 UCN2Q96RP3 112 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms