RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SAPCD2Q86UD0 394 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 JMYQ8N9B5 988 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 CDCA5Q96FF9 252 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 ZDHHC15Q96MV8 337 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 TLR7Q9NYK1 1049 aaKnown RBP15.98■□□□□ 0.15
VPS28-216ENST00000533806 PCDHB15Q9Y5E8 787 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 TLL2Q9Y6L7 1015 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 CNTNAP1P78357 1384 aa15.98■□□□□ 0.15
VPS28-216ENST00000533806 RAB11FIP3O75154 756 aa15.97■□□□□ 0.15
VPS28-216ENST00000533806 MCAMP43121 646 aa15.97■□□□□ 0.15
VPS28-216ENST00000533806 APOBEC3HQ6NTF7 200 aaKnown RBP15.97■□□□□ 0.15
VPS28-216ENST00000533806 PI16Q6UXB8 463 aa15.97■□□□□ 0.15
VPS28-216ENST00000533806 SPATA5Q8NB90 893 aa15.97■□□□□ 0.15
VPS28-216ENST00000533806 CRBNQ96SW2 442 aa15.97■□□□□ 0.15
VPS28-216ENST00000533806 MAST3O60307 1309 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 UQCRFS1P1P0C7P4 283 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 SPDYE2Q495Y8 402 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 GORABQ5T7V8 394 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 APOBEC3FQ8IUX4 373 aaKnown RBP15.96■□□□□ 0.15
VPS28-216ENST00000533806 TEKT1Q969V4 418 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 HHIPL1Q96JK4 782 aa15.96■□□□□ 0.15
VPS28-216ENST00000533806 CCDC8Q9H0W5 538 aaPredicted RBP15.96■□□□□ 0.15
VPS28-216ENST00000533806 POLR2AP24928 1970 aaKnown RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 LDHBP07195 334 aaKnown RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 RBM5P52756 815 aaKnown RBP eCLIP15.95■□□□□ 0.14
VPS28-216ENST00000533806 DEFB115Q30KQ5 88 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 PRAMEF18Q5VWM3 479 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 ZNF384Q8TF68 577 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 KIF1BPQ96EK5 621 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 FAM163AQ96GL9 167 aaPredicted RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 DEFB129Q9H1M3 183 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 DCTPP1Q9H773 170 aa15.95■□□□□ 0.14
VPS28-216ENST00000533806 TDRD3Q9H7E2 651 aaKnown RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 ZNF70Q9UC06 446 aaPredicted RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 MKRN1Q9UHC7 482 aaKnown RBP15.95■□□□□ 0.14
VPS28-216ENST00000533806 CLRN2A0PK11 232 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 MYO1BO43795 1136 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 DIXDC1Q155Q3 683 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 CCDC158Q5M9N0 1113 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 ZGPATQ8N5A5 531 aaKnown RBP15.94■□□□□ 0.14
VPS28-216ENST00000533806 ZNF408Q9H9D4 720 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 GBA2Q9HCG7 927 aaPredicted RBP15.94■□□□□ 0.14
VPS28-216ENST00000533806 IL1RAPL2Q9NP60 686 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 ABT1Q9ULW3 272 aaKnown RBP15.94■□□□□ 0.14
VPS28-216ENST00000533806 PPP2R3BQ9Y5P8 575 aa15.94■□□□□ 0.14
VPS28-216ENST00000533806 TRPM7Q96QT4 1865 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 VEGFBP49765 207 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 FKBP1BP68106 108 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 AACSQ86V21 672 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 DAGLAQ9Y4D2 1042 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 GAKO14976 1311 aa15.93■□□□□ 0.14
VPS28-216ENST00000533806 CYP2E1P05181 493 aaPredicted RBP15.92■□□□□ 0.14
VPS28-216ENST00000533806 RASA3Q14644 834 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 TTC39AQ5SRH9 613 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 FKBP1CQ5VVH2 108 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 SPTY2D1Q68D10 685 aaPredicted RBP15.92■□□□□ 0.14
VPS28-216ENST00000533806 TBC1D9Q6ZT07 1266 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 CLASRPQ8N2M8 674 aaKnown RBP15.92■□□□□ 0.14
VPS28-216ENST00000533806 TEPSINQ96N21 525 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 ABCF2Q9UG63 623 aa15.92■□□□□ 0.14
VPS28-216ENST00000533806 SUPT16HQ9Y5B9 1047 aaKnown RBP15.92■□□□□ 0.14
VPS28-216ENST00000533806 APBB1O00213 710 aa15.91■□□□□ 0.14
VPS28-216ENST00000533806 MECOMQ03112 1051 aa15.91■□□□□ 0.14
VPS28-216ENST00000533806 AAMPQ13685 434 aa15.91■□□□□ 0.14
VPS28-216ENST00000533806 C2orf69Q8N8R5 385 aa15.91■□□□□ 0.14
VPS28-216ENST00000533806 NSUN4Q96CB9 384 aaKnown RBP15.91■□□□□ 0.14
VPS28-216ENST00000533806 SNRKQ9NRH2 765 aa15.91■□□□□ 0.14
VPS28-216ENST00000533806 IGSF3O75054 1194 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 ZAP70P43403 619 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 HUNKP57058 714 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 CDC42EP5Q6NZY7 148 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 LRRCC1Q9C099 1032 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 VEZTQ9HBM0 779 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 SSC5DA1L4H1 1573 aa15.9■□□□□ 0.14
VPS28-216ENST00000533806 WDR33Q9C0J8 1336 aaKnown RBP15.9■□□□□ 0.14
VPS28-216ENST00000533806 CACNB3P54284 484 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 TNFAIP1Q13829 316 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 MAP3K11Q16584 847 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 NBPF12Q5TAG4 269 aaPredicted RBP15.89■□□□□ 0.13
VPS28-216ENST00000533806 CYP4F22Q6NT55 531 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 MOB2Q70IA6 237 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 ERICH6Q7L0X2 663 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 FAM83AQ86UY5 434 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 CAPNS2Q96L46 248 aa15.89■□□□□ 0.13
VPS28-216ENST00000533806 AKAP11Q9UKA4 1901 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 MYH13Q9UKX3 1938 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 GPR75-ASB3A0A0A6YYF3 556 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 FAM155AB1AL88 458 aaPredicted RBP15.88■□□□□ 0.13
VPS28-216ENST00000533806 TCP10L2B9ZVM9 353 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 HDAC1Q13547 482 aaPredicted RBP15.88■□□□□ 0.13
VPS28-216ENST00000533806 LDLRAD1Q5T700 205 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 DZIP1Q86YF9 867 aaKnown RBP15.88■□□□□ 0.13
VPS28-216ENST00000533806 CDAN1Q8IWY9 1227 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.88■□□□□ 0.13
VPS28-216ENST00000533806 PIH1D3Q9NQM4 214 aaKnown RBP15.88■□□□□ 0.13
VPS28-216ENST00000533806 ECM29Q5VYK3 1845 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 MROH7-TTC4A0A0A0MT08 1334 aa15.88■□□□□ 0.13
VPS28-216ENST00000533806 RFX7Q2KHR2 1363 aa15.87■□□□□ 0.13
VPS28-216ENST00000533806 SMARCA5O60264 1052 aaPredicted RBP15.87■□□□□ 0.13
VPS28-216ENST00000533806 IFIT2P09913 472 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms