RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 PTPRCP08575 1304 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 AOX1Q06278 1338 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 IGF2BP3O00425 579 aaKnown RBP eCLIP15.22■□□□□ 0.03
USH1C-208ENST00000529563 WDHD1O75717 1129 aaPredicted RBP15.22■□□□□ 0.03
USH1C-208ENST00000529563 IFIT1P09914 478 aaKnown RBP15.22■□□□□ 0.03
USH1C-208ENST00000529563 LRRC24Q50LG9 513 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 TEKT1Q969V4 418 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 TMEM39BQ9GZU3 492 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 RIPOR2Q9Y4F9 1068 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 PDE4DIPQ5VU43 2346 aa15.22■□□□□ 0.03
USH1C-208ENST00000529563 CRHR2Q13324 411 aa15.21■□□□□ 0.03
USH1C-208ENST00000529563 MRPL50Q8N5N7 158 aaKnown RBP15.21■□□□□ 0.03
USH1C-208ENST00000529563 UTYO14607 1347 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 MAST3O60307 1309 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 E9PSI1 815 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 PDE8BO95263 885 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 GTF2A2P52657 109 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 MAP3K9P80192 1104 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 ARHGEF6Q15052 776 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 PRPF38BQ5VTL8 546 aaKnown RBP15.2■□□□□ 0.02
USH1C-208ENST00000529563 FBXO33Q7Z6M2 555 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 CD99L2Q8TCZ2 262 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 HOOK2Q96ED9 719 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 KAZALD1Q96I82 304 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 EFCC1Q9HA90 598 aa15.2■□□□□ 0.02
USH1C-208ENST00000529563 CCL15-CCL14A0A0B4J2E2 113 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 SLC5A1P13866 664 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 GJA5P36382 358 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 BCAMP50895 628 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 CACNB3P54284 484 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 HDLBPQ00341 1268 aaKnown RBP15.19■□□□□ 0.02
USH1C-208ENST00000529563 SP3Q02447 781 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 PUM3Q15397 648 aaKnown RBP15.19■□□□□ 0.02
USH1C-208ENST00000529563 TAF1CQ15572 869 aaPredicted RBP15.19■□□□□ 0.02
USH1C-208ENST00000529563 CCL15Q16663 113 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 RABL6Q3YEC7 729 aaPredicted RBP15.19■□□□□ 0.02
USH1C-208ENST00000529563 OTOP1Q7RTM1 612 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 ANKRD44Q8N8A2 993 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 KLHDC4Q8TBB5 520 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 OTUD5Q96G74 571 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 ZFYVE28Q9HCC9 887 aa15.19■□□□□ 0.02
USH1C-208ENST00000529563 TNRC18O15417 2968 aaPredicted RBP15.18■□□□□ 0.02
USH1C-208ENST00000529563 HNRNPUQ00839 825 aaKnown RBP eCLIP15.18■□□□□ 0.02
USH1C-208ENST00000529563 VGLL4Q14135 290 aa15.18■□□□□ 0.02
USH1C-208ENST00000529563 INTS3Q68E01 1043 aaKnown RBP15.18■□□□□ 0.02
USH1C-208ENST00000529563 SSH1Q8WYL5 1049 aa15.18■□□□□ 0.02
USH1C-208ENST00000529563 SMC4Q9NTJ3 1288 aa15.18■□□□□ 0.02
USH1C-208ENST00000529563 ARAP2Q8WZ64 1704 aa15.17■□□□□ 0.02
USH1C-208ENST00000529563 DCAF15Q66K64 600 aa15.17■□□□□ 0.02
USH1C-208ENST00000529563 CDAN1Q8IWY9 1227 aa15.17■□□□□ 0.02
USH1C-208ENST00000529563 TEPSINQ96N21 525 aa15.17■□□□□ 0.02
USH1C-208ENST00000529563 WRNIP1Q96S55 665 aa15.17■□□□□ 0.02
USH1C-208ENST00000529563 KIF22Q14807 665 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 GRIK5Q16478 980 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.16■□□□□ 0.02
USH1C-208ENST00000529563 WDR66Q8TBY9 1149 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 CNKSR2Q8WXI2 1034 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 PTPN18Q99952 460 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 TMEM106CQ9BVX2 250 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 GNL3LQ9NVN8 582 aaKnown RBP15.16■□□□□ 0.02
USH1C-208ENST00000529563 PTPN22Q9Y2R2 807 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 SUGT1Q9Y2Z0 365 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 ZNF521Q96K83 1311 aa15.16■□□□□ 0.02
USH1C-208ENST00000529563 TESPA1A2RU30 521 aaPredicted RBP15.15■□□□□ 0.02
USH1C-208ENST00000529563 EYA2O00167 538 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 UBTFL1P0CB47 393 aaPredicted RBP15.15■□□□□ 0.02
USH1C-208ENST00000529563 CETPP11597 493 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 VGLL2Q8N8G2 317 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.15■□□□□ 0.02
USH1C-208ENST00000529563 BRI3BPQ8WY22 251 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 LPIN2Q92539 896 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 ZDHHC15Q96MV8 337 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 USP44Q9H0E7 712 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 SIL1Q9H173 461 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 HDAC5Q9UQL6 1122 aa15.15■□□□□ 0.02
USH1C-208ENST00000529563 ALDH1L2Q3SY69 923 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 FAM83AQ86UY5 434 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 ERO1BQ86YB8 467 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 MS4A4AQ96JQ5 239 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 OTOFQ9HC10 1997 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 KIF16BQ96L93 1317 aa15.14■□□□□ 0.01
USH1C-208ENST00000529563 SNAPC2Q13487 334 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 SLC9C1Q4G0N8 1177 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 HHIPL2Q6UWX4 724 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 MIGA2Q7L4E1 593 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 NBPF11Q86T75 865 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 ZKSCAN4Q969J2 545 aaPredicted RBP15.13■□□□□ 0.01
USH1C-208ENST00000529563 MRIQ9BWK5 157 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 ZNF341Q9BYN7 854 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 CEP126Q9P2H0 1117 aa15.13■□□□□ 0.01
USH1C-208ENST00000529563 SPDYE5A6NIY4 337 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 SLFN5Q08AF3 891 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 TCP10Q12799 353 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 ATP2B3Q16720 1220 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 SLC4A8Q2Y0W8 1093 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 FKBP1CQ5VVH2 108 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 APOBEC3HQ6NTF7 200 aaKnown RBP15.12■□□□□ 0.01
USH1C-208ENST00000529563 FAM43AQ8N2R8 423 aa15.12■□□□□ 0.01
USH1C-208ENST00000529563 POTEFA5A3E0 1075 aa15.11■□□□□ 0.01
USH1C-208ENST00000529563 LDHBP07195 334 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms