RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 OTUD7BQ6GQQ9 843 aa29.74■■■□□ 2.35
CPSF1-202ENST00000527827 FAM9BQ8IZU0 186 aa29.74■■■□□ 2.35
CPSF1-202ENST00000527827 BICC1Q9H694 974 aaKnown RBP29.74■■■□□ 2.35
CPSF1-202ENST00000527827 ELP3Q9H9T3 547 aa29.74■■■□□ 2.35
CPSF1-202ENST00000527827 TCP10L2B9ZVM9 353 aa29.73■■■□□ 2.35
CPSF1-202ENST00000527827 OPTNQ96CV9 577 aa29.73■■■□□ 2.35
CPSF1-202ENST00000527827 LRRC24Q50LG9 513 aa29.72■■■□□ 2.35
CPSF1-202ENST00000527827 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.72■■■□□ 2.35
CPSF1-202ENST00000527827 ANKRD44Q8N8A2 993 aa29.72■■■□□ 2.35
CPSF1-202ENST00000527827 CD99L2Q8TCZ2 262 aa29.72■■■□□ 2.35
CPSF1-202ENST00000527827 ERO1AQ96HE7 468 aa29.72■■■□□ 2.35
CPSF1-202ENST00000527827 TMEM39BQ9GZU3 492 aa29.72■■■□□ 2.35
CPSF1-202ENST00000527827 IQSEC3Q9UPP2 1182 aaPredicted RBP29.72■■■□□ 2.35
CPSF1-202ENST00000527827 MS4A4AQ96JQ5 239 aa29.71■■■□□ 2.35
CPSF1-202ENST00000527827 ZNF521Q96K83 1311 aa29.71■■■□□ 2.35
CPSF1-202ENST00000527827 CNKSR2Q8WXI2 1034 aa29.7■■■□□ 2.35
CPSF1-202ENST00000527827 PTPN22Q9Y2R2 807 aa29.7■■■□□ 2.35
CPSF1-202ENST00000527827 CAP1Q01518 475 aa29.69■■■□□ 2.34
CPSF1-202ENST00000527827 CHAF1AQ13111 956 aaPredicted RBP29.69■■■□□ 2.34
CPSF1-202ENST00000527827 VPS37DQ86XT2 251 aa29.69■■■□□ 2.34
CPSF1-202ENST00000527827 MRPL50Q8N5N7 158 aaKnown RBP29.69■■■□□ 2.34
CPSF1-202ENST00000527827 VGLL2Q8N8G2 317 aa29.69■■■□□ 2.34
CPSF1-202ENST00000527827 TNNI2P48788 182 aa29.68■■■□□ 2.34
CPSF1-202ENST00000527827 METTL24Q5JXM2 366 aa29.68■■■□□ 2.34
CPSF1-202ENST00000527827 PCDH10Q9P2E7 1040 aa29.68■■■□□ 2.34
CPSF1-202ENST00000527827 RBBP6Q7Z6E9 1792 aaKnown RBP29.67■■■□□ 2.34
CPSF1-202ENST00000527827 POTEFA5A3E0 1075 aa29.67■■■□□ 2.34
CPSF1-202ENST00000527827 ZNF316A6NFI3 1004 aaPredicted RBP29.67■■■□□ 2.34
CPSF1-202ENST00000527827 MAP3K9P80192 1104 aa29.67■■■□□ 2.34
CPSF1-202ENST00000527827 HDLBPQ00341 1268 aaKnown RBP29.67■■■□□ 2.34
CPSF1-202ENST00000527827 SP3Q02447 781 aa29.67■■■□□ 2.34
CPSF1-202ENST00000527827 VGLL4Q14135 290 aa29.67■■■□□ 2.34
CPSF1-202ENST00000527827 INTS3Q68E01 1043 aaKnown RBP29.67■■■□□ 2.34
CPSF1-202ENST00000527827 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.67■■■□□ 2.342e-11■□□□□ 8.5
CPSF1-202ENST00000527827 BRI3BPQ8WY22 251 aa29.67■■■□□ 2.34
CPSF1-202ENST00000527827 PDE8BO95263 885 aa29.66■■■□□ 2.34
CPSF1-202ENST00000527827 CAVIN4Q5BKX8 364 aa29.66■■■□□ 2.34
CPSF1-202ENST00000527827 TBC1D22AQ8WUA7 517 aa29.66■■■□□ 2.34
CPSF1-202ENST00000527827 EFCC1Q9HA90 598 aa29.66■■■□□ 2.34
CPSF1-202ENST00000527827 KIAA0100Q14667 2235 aaKnown RBP29.65■■■□□ 2.34
CPSF1-202ENST00000527827 CACNB3P54284 484 aa29.65■■■□□ 2.34
CPSF1-202ENST00000527827 KLHDC4Q8TBB5 520 aa29.65■■■□□ 2.34
CPSF1-202ENST00000527827 CENPFP49454 3210 aa29.64■■■□□ 2.34
CPSF1-202ENST00000527827 BCAMP50895 628 aa29.64■■■□□ 2.34
CPSF1-202ENST00000527827 TEKT1Q969V4 418 aa29.64■■■□□ 2.34
CPSF1-202ENST00000527827 CCL15-CCL14A0A0B4J2E2 113 aa29.63■■■□□ 2.33
CPSF1-202ENST00000527827 FRAT2O75474 233 aaPredicted RBP29.63■■■□□ 2.33
CPSF1-202ENST00000527827 GTF2A2P52657 109 aa29.63■■■□□ 2.33
CPSF1-202ENST00000527827 CCL15Q16663 113 aa29.63■■■□□ 2.33
CPSF1-202ENST00000527827 PTPRCP08575 1304 aa29.63■■■□□ 2.33
CPSF1-202ENST00000527827 ARMC5Q96C12 935 aa29.62■■■□□ 2.33
CPSF1-202ENST00000527827 ZDHHC15Q96MV8 337 aa29.62■■■□□ 2.33
CPSF1-202ENST00000527827 MRIQ9BWK5 157 aa29.62■■■□□ 2.33
CPSF1-202ENST00000527827 USP44Q9H0E7 712 aa29.62■■■□□ 2.33
CPSF1-202ENST00000527827 CSADQ9Y600 493 aa29.62■■■□□ 2.33
CPSF1-202ENST00000527827 FAM43AQ8N2R8 423 aa29.61■■■□□ 2.33
CPSF1-202ENST00000527827 OTUD5Q96G74 571 aa29.61■■■□□ 2.33
CPSF1-202ENST00000527827 MKI67P46013 3256 aaKnown RBP29.6■■■□□ 2.33
CPSF1-202ENST00000527827 FGFR2P21802 821 aa29.6■■■□□ 2.33
CPSF1-202ENST00000527827 TAF1CQ15572 869 aaPredicted RBP29.6■■■□□ 2.33
CPSF1-202ENST00000527827 APOBEC3HQ6NTF7 200 aaKnown RBP29.6■■■□□ 2.33
CPSF1-202ENST00000527827 SNCAIPQ9Y6H5 919 aa29.6■■■□□ 2.33
CPSF1-202ENST00000527827 MYH13Q9UKX3 1938 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 SPDYE5A6NIY4 337 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 FAM83AQ86UY5 434 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 SSH1Q8WYL5 1049 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 ZFYVE28Q9HCC9 887 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 KIF16BQ96L93 1317 aa29.59■■■□□ 2.33
CPSF1-202ENST00000527827 SUGT1Q9Y2Z0 365 aa29.58■■■□□ 2.33
CPSF1-202ENST00000527827 RFX5P48382 616 aaPredicted RBP29.57■■■□□ 2.32
CPSF1-202ENST00000527827 PUM3Q15397 648 aaKnown RBP29.57■■■□□ 2.32
CPSF1-202ENST00000527827 FKBP1CQ5VVH2 108 aa29.57■■■□□ 2.32
CPSF1-202ENST00000527827 TMOD2Q9NZR1 351 aa29.57■■■□□ 2.32
CPSF1-202ENST00000527827 MAST3O60307 1309 aa29.56■■■□□ 2.32
CPSF1-202ENST00000527827 IFIT1P09914 478 aaKnown RBP29.56■■■□□ 2.32
CPSF1-202ENST00000527827 HHIPL2Q6UWX4 724 aa29.56■■■□□ 2.32
CPSF1-202ENST00000527827 ERO1BQ86YB8 467 aa29.56■■■□□ 2.32
CPSF1-202ENST00000527827 WRNIP1Q96S55 665 aa29.56■■■□□ 2.32
CPSF1-202ENST00000527827 ZKSCAN4Q969J2 545 aaPredicted RBP29.55■■■□□ 2.32
CPSF1-202ENST00000527827 EYA2O00167 538 aa29.54■■■□□ 2.32
CPSF1-202ENST00000527827 EN2P19622 333 aaPredicted RBP29.54■■■□□ 2.32
CPSF1-202ENST00000527827 ZSWIM8A7E2V4 1837 aa29.54■■■□□ 2.32
CPSF1-202ENST00000527827 BRCA2P51587 3418 aa29.54■■■□□ 2.32
CPSF1-202ENST00000527827 RPAP1Q9BWH6 1393 aaPredicted RBP29.53■■■□□ 2.32
CPSF1-202ENST00000527827 CETPP11597 493 aa29.53■■■□□ 2.32
CPSF1-202ENST00000527827 ZEB1P37275 1124 aaPredicted RBP29.53■■■□□ 2.32
CPSF1-202ENST00000527827 ZNF333Q96JL9 665 aa29.53■■■□□ 2.32
CPSF1-202ENST00000527827 PTCH2Q9Y6C5 1203 aa29.53■■■□□ 2.32
CPSF1-202ENST00000527827 E9PSI1 815 aa29.52■■■□□ 2.32
CPSF1-202ENST00000527827 IRF6O14896 467 aa29.52■■■□□ 2.32
CPSF1-202ENST00000527827 ARHGEF6Q15052 776 aa29.52■■■□□ 2.32
CPSF1-202ENST00000527827 HOOK2Q96ED9 719 aa29.52■■■□□ 2.32
CPSF1-202ENST00000527827 BTBD19C9JJ37 291 aa29.51■■■□□ 2.31
CPSF1-202ENST00000527827 SLC5A1P13866 664 aa29.51■■■□□ 2.31
CPSF1-202ENST00000527827 ATG9AQ7Z3C6 839 aa29.51■■■□□ 2.31
CPSF1-202ENST00000527827 WDR66Q8TBY9 1149 aa29.51■■■□□ 2.31
CPSF1-202ENST00000527827 LPIN2Q92539 896 aa29.51■■■□□ 2.31
CPSF1-202ENST00000527827 ZCCHC17Q9NP64 241 aaKnown RBP29.51■■■□□ 2.31
CPSF1-202ENST00000527827 TLR2O60603 784 aa29.5■■■□□ 2.31
CPSF1-202ENST00000527827 PPIL2Q13356 520 aa29.5■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms