RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 MVPQ14764 893 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 SLC5A9Q2M3M2 681 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 TMEM259Q4ZIN3 620 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 ARHGAP29Q52LW3 1261 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 RPUSD2Q8IZ73 545 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 PNMA1Q8ND90 353 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 ADAM32Q8TC27 787 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 EPS8L1Q8TE68 723 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 FUCA2Q9BTY2 467 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 TRAIPQ9BWF2 469 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 GDPD2Q9HCC8 539 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 PDRG1Q9NUG6 133 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 CHCHD3Q9NX63 227 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 ORC3Q9UBD5 711 aaPredicted RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 EXOC6BQ9Y2D4 811 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 GPSM3Q9Y4H4 160 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 COL17A1Q9UMD9 1497 aaPredicted RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 LAMC1P11047 1609 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 CLTCL1P53675 1640 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 MAP3K4Q9Y6R4 1608 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 FIGNL2A6NMB9 653 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 TTLL8A6PVC2 850 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 PPFIA3O75145 1194 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 CAND2O75155 1236 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 CDC45O75419 566 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 USP17L8P0C7I0 530 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 MYBL2P10244 700 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 CASTP20810 708 aaKnown RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 GPTP24298 496 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 RPS6KA3P51812 740 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 NUCB1Q02818 461 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 PREPLQ4J6C6 727 aaPredicted RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 ANKRD45Q5TZF3 282 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 ARMCX6Q7L4S7 300 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 KIAA1328Q86T90 577 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 WDR63Q8IWG1 891 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 TMTC2Q8N394 836 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 SPC24Q8NBT2 197 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 FAM200AQ8TCP9 573 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 ZNF483Q8TF39 744 aaPredicted RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 TCP11Q8WWU5 503 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 UBXN4Q92575 508 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 N4BP2L2Q92802 583 aaPredicted RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 BAG1Q99933 345 aaPredicted RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 OCSTAMPQ9BR26 566 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 THUMPD2Q9BTF0 503 aaKnown RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 CARD11Q9BXL7 1154 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 HOMER3Q9NSC5 361 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 TBC1D2BQ9UPU7 963 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.73□□□□□ -1.33
CD44-225ENST00000527326 IQGAP2Q13576 1575 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 ATXN2Q99700 1313 aaKnown RBP6.73□□□□□ -1.33
CD44-225ENST00000527326 ADGRL1O94910 1474 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 LMTK3Q96Q04 1460 aa6.73□□□□□ -1.33
CD44-225ENST00000527326 PRDM15P57071 1507 aaPredicted RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 UGGT2Q9NYU1 1516 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 PPRC1Q5VV67 1664 aaKnown RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 CHUKO15111 745 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 TBC1D8O95759 1140 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 CCDC192P0DO97 292 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 IMPDH2P12268 514 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 RAB15P59190 212 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 CCT2P78371 535 aaKnown RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 ERCC6LQ2NKX8 1250 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.72□□□□□ -1.33
CD44-225ENST00000527326 CCDC93Q567U6 631 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 INTS6LQ5JSJ4 861 aaKnown RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 Q6ZVU0 165 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 RBM12BQ8IXT5 1001 aaKnown RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 DRC7Q8IY82 874 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 DRAXINQ8NBI3 349 aaPredicted RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 CTCFLQ8NI51 663 aaPredicted RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 BICD2Q8TD16 824 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 CABS1Q96KC9 395 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 ACBD3Q9H3P7 528 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 HMX1Q9NP08 348 aaPredicted RBP6.72□□□□□ -1.33
CD44-225ENST00000527326 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.72□□□□□ -1.33
CD44-225ENST00000527326 PTPRGP23470 1445 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 IL16Q14005 1332 aa6.72□□□□□ -1.33
CD44-225ENST00000527326 EFCAB8A8MWE9 144 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 SRGAP3O43295 1099 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 RTN2O75298 545 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 CDKL5O76039 1030 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 CAVIN2O95810 425 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 CT47B1P0C2W7 299 aaPredicted RBP6.71□□□□□ -1.34
CD44-225ENST00000527326 VSIG8P0DPA2 414 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 RLBP1P12271 317 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 LORP23490 312 aaPredicted RBP6.71□□□□□ -1.34
CD44-225ENST00000527326 CHMLP26374 656 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 KCNJ6P48051 423 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 ZNF75DP51815 510 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 RARSP54136 660 aaKnown RBP6.71□□□□□ -1.34
CD44-225ENST00000527326 SLC8A3P57103 927 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 UBE2HP62256 183 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 SCRN1Q12765 414 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 PKP1Q13835 747 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 FILIP1LQ4L180 1135 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 WLSQ5T9L3 541 aa6.71□□□□□ -1.34
CD44-225ENST00000527326 CC2D1AQ6P1N0 951 aaPredicted RBP6.71□□□□□ -1.34
CD44-225ENST00000527326 TRIM74Q86UV6 250 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms