RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 NUCB1Q02818 461 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 MECOMQ03112 1051 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 PRKG1Q13976 671 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 DLGAP5Q15398 846 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 SLC4A8Q2Y0W8 1093 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 ADGRA1Q86SQ6 560 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 USP48Q86UV5 1035 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 CHD1LQ86WJ1 897 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 DZIP1Q86YF9 867 aaKnown RBP5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 SMC5Q8IY18 1101 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 OGFOD1Q8N543 542 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 WDR66Q8TBY9 1149 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF384Q8TF68 577 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 DPF2Q92785 391 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 GCC1Q96CN9 775 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 CCDC136Q96JN2 1154 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 PRMT6Q96LA8 375 aaPredicted RBP5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 GLIS2Q9BZE0 524 aaPredicted RBP5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF408Q9H9D4 720 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 ECHDC1Q9NTX5 307 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 FZD1Q9UP38 647 aa5.62□□□□□ -1.51
CHMP4A-202ENST00000524955 TCP10L2B9ZVM9 353 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 SEMA3EO15041 775 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 SLURP2P0DP57 97 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 ATP5JP18859 108 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 MX1P20591 662 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 CYP7A1P22680 504 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 DYNLL1P63167 89 aaKnown RBP5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 AAMPQ13685 434 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 CHADLQ6NUI6 762 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 USP50Q70EL3 339 aaPredicted RBP5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 ERICH6Q7L0X2 663 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 CDAN1Q8IWY9 1227 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 CNTROBQ8N137 903 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 ADAMTSL1Q8N6G6 1762 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 MIGA1Q8NAN2 632 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 PI4K2BQ8TCG2 481 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 TBC1D22AQ8WUA7 517 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 MYO3BQ8WXR4 1341 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 VEZTQ9HBM0 779 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 PAG1Q9NWQ8 432 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 HDAC9Q9UKV0 1011 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 DAGLAQ9Y4D2 1042 aa5.61□□□□□ -1.51
CHMP4A-202ENST00000524955 CHD4Q14839 1912 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 WDR90Q96KV7 1748 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 SALL3Q9BXA9 1300 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 SPDYE2BA6NHP3 402 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 TOMM70O94826 608 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 SPDYE6P0CI01 402 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 BTDP43251 543 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 RGS3P49796 1198 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 PDE1AP54750 535 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 FKBP1AP62942 108 aaKnown RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 TCP10Q12799 353 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 PICALMQ13492 652 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 APOBEC3HQ6NTF7 200 aaKnown RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 CDC42EP5Q6NZY7 148 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 MOB2Q70IA6 237 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 KRT26Q7Z3Y9 468 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 PNMA8AQ86V59 439 aaPredicted RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 LDHDQ86WU2 507 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 PLEKHM2Q8IWE5 1019 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 ZFPM1Q8IX07 1006 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 MAGEB6Q8N7X4 407 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 SMC1BQ8NDV3 1235 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 TEKT1Q969V4 418 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 RILPL2Q969X0 211 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 DCPSQ96C86 337 aaKnown RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 NSUN4Q96CB9 384 aaKnown RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 ZBED3Q96IU2 234 aaPredicted RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 HAUS7Q99871 368 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 USP40Q9NVE5 1235 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 AATFQ9NY61 560 aaKnown RBP eCLIP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF70Q9UC06 446 aaPredicted RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 DICER1Q9UPY3 1922 aaKnown RBP5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 ARAP2Q8WZ64 1704 aa5.6□□□□□ -1.51
CHMP4A-202ENST00000524955 MROH7-TTC4A0A0A0MT08 1334 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF532Q9HCE3 1301 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SALL1Q9NSC2 1324 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 TRIM6-TRIM34B2RNG4 842 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 ITGBL1O95965 494 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 PDE6AP16499 860 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 EVX2Q03828 476 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 NFIAQ12857 509 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 GRM1Q13255 1194 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SLC9C2Q5TAH2 1124 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SPTY2D1Q68D10 685 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 NAA16Q6N069 864 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SH3RF3Q8TEJ3 882 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 GPATCH3Q96I76 525 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF512BQ96KM6 892 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SEC62Q99442 399 aaKnown RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 TMEM39BQ9GZU3 492 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 ARMT1Q9H993 441 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 DDX4Q9NQI0 724 aaKnown RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 PPP4R2Q9NY27 417 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SAP30BPQ9UHR5 308 aaKnown RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 SERPINA10Q9UK55 444 aa5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 ZNF646O15015 1829 aaPredicted RBP5.59□□□□□ -1.51
CHMP4A-202ENST00000524955 MAST3O60307 1309 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms