RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TIMM10P62072 90 aa20.11■□□□□ 0.81
LSM1-205ENST00000523511 PNMA6EA0A0J9YXQ4 647 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 A0A1B0GUL7 405 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 CLRN2A0PK11 232 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 PRAMEF18Q5VWM3 479 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 CCDC102BQ68D86 513 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 SSH3Q8TE77 659 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 DDX19BQ9UMR2 479 aa20.1■□□□□ 0.81
LSM1-205ENST00000523511 SCAF8Q9UPN6 1271 aaKnown RBP20.1■□□□□ 0.81
LSM1-205ENST00000523511 COL1A1P02452 1464 aaPredicted RBP20.1■□□□□ 0.81
LSM1-205ENST00000523511 AOC2O75106 756 aa20.09■□□□□ 0.81
LSM1-205ENST00000523511 SURF6O75683 361 aaKnown RBP20.09■□□□□ 0.81
LSM1-205ENST00000523511 LDHBP07195 334 aaKnown RBP20.09■□□□□ 0.81
LSM1-205ENST00000523511 SPTY2D1Q68D10 685 aaPredicted RBP20.09■□□□□ 0.81
LSM1-205ENST00000523511 HHIPL2Q6UWX4 724 aa20.09■□□□□ 0.81
LSM1-205ENST00000523511 SLF2Q8IX21 1173 aa20.09■□□□□ 0.81
LSM1-205ENST00000523511 XAGE2Q96GT9 111 aa20.09■□□□□ 0.81
LSM1-205ENST00000523511 ZNF70Q9UC06 446 aaPredicted RBP20.09■□□□□ 0.81
LSM1-205ENST00000523511 TRPM7Q96QT4 1865 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 UNCXA6NJT0 531 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 FOXN1O15353 648 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 RLBP1P12271 317 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 POLA2Q14181 598 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 SPDYE2Q495Y8 402 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 PANK1Q8TE04 598 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 HOOK2Q96ED9 719 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 ZDHHC15Q96MV8 337 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 TDRD3Q9H7E2 651 aaKnown RBP20.08■□□□□ 0.81
LSM1-205ENST00000523511 PRDM10Q9NQV6 1147 aa20.08■□□□□ 0.81
LSM1-205ENST00000523511 UBE2Q2LH0YL09 131 aa20.07■□□□□ 0.8
LSM1-205ENST00000523511 RASA3Q14644 834 aa20.07■□□□□ 0.8
LSM1-205ENST00000523511 HSP90AB4PQ58FF6 505 aa20.07■□□□□ 0.8
LSM1-205ENST00000523511 GPR108Q9NPR9 543 aa20.07■□□□□ 0.8
LSM1-205ENST00000523511 SALL1Q9NSC2 1324 aa20.06■□□□□ 0.8
LSM1-205ENST00000523511 PHKA1P46020 1223 aa20.06■□□□□ 0.8
LSM1-205ENST00000523511 CCDC158Q5M9N0 1113 aa20.06■□□□□ 0.8
LSM1-205ENST00000523511 C1orf115Q9H7X2 142 aa20.06■□□□□ 0.8
LSM1-205ENST00000523511 ANGEL1Q9UNK9 670 aaKnown RBP20.06■□□□□ 0.8
LSM1-205ENST00000523511 PDS5AQ29RF7 1337 aaKnown RBP20.05■□□□□ 0.8
LSM1-205ENST00000523511 HMMRO75330 724 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 SLC10A3P09131 477 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 UQCRFS1P1P0C7P4 283 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 IREB2P48200 963 aaKnown RBP20.05■□□□□ 0.8
LSM1-205ENST00000523511 PRKG1Q13976 671 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 ERC1Q8IUD2 1116 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 RPAP2Q8IXW5 612 aaPredicted RBP20.05■□□□□ 0.8
LSM1-205ENST00000523511 PCDHAC2Q9Y5I4 1007 aa20.05■□□□□ 0.8
LSM1-205ENST00000523511 A0A1B0GUL6 1792 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 ADORA1P30542 326 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 KIF23Q02241 960 aaPredicted RBP20.04■□□□□ 0.8
LSM1-205ENST00000523511 PDE3AQ14432 1141 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 FKBP1CQ5VVH2 108 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 SLC10A4Q96EP9 437 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 ABCF2Q9UG63 623 aa20.04■□□□□ 0.8
LSM1-205ENST00000523511 NOP58Q9Y2X3 529 aaKnown RBP20.04■□□□□ 0.8
LSM1-205ENST00000523511 FAM155AB1AL88 458 aaPredicted RBP20.03■□□□□ 0.8
LSM1-205ENST00000523511 TCP10L2B9ZVM9 353 aa20.03■□□□□ 0.8
LSM1-205ENST00000523511 GRIK5Q16478 980 aa20.03■□□□□ 0.8
LSM1-205ENST00000523511 COL13A1Q5TAT6 717 aaPredicted RBP20.03■□□□□ 0.8
LSM1-205ENST00000523511 DZIP1Q86YF9 867 aaKnown RBP20.03■□□□□ 0.8
LSM1-205ENST00000523511 COG6Q9Y2V7 657 aa20.03■□□□□ 0.8
LSM1-205ENST00000523511 LBX1P52954 281 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 MAP3K11Q16584 847 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 CEP85Q6P2H3 762 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 MOB2Q70IA6 237 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 FAM83AQ86UY5 434 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 TNS4Q8IZW8 715 aa20.02■□□□□ 0.8
LSM1-205ENST00000523511 LDHCP07864 332 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 GSTO1P78417 241 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 RASGRF1Q13972 1273 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 TTC39AQ5SRH9 613 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 LDLRAD1Q5T700 205 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 NBPF12Q5TAG4 269 aaPredicted RBP20.01■□□□□ 0.79
LSM1-205ENST00000523511 APOBEC3HQ6NTF7 200 aaKnown RBP20.01■□□□□ 0.79
LSM1-205ENST00000523511 ERICH6Q7L0X2 663 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 RASAL3Q86YV0 1011 aa20.01■□□□□ 0.79
LSM1-205ENST00000523511 IGSF3O75054 1194 aa20■□□□□ 0.79
LSM1-205ENST00000523511 PRDX5P30044 214 aa20■□□□□ 0.79
LSM1-205ENST00000523511 INHBEP58166 350 aa20■□□□□ 0.79
LSM1-205ENST00000523511 SREBF2Q12772 1141 aa20■□□□□ 0.79
LSM1-205ENST00000523511 TNNI3KQ59H18 835 aa20■□□□□ 0.79
LSM1-205ENST00000523511 ANKRD13AQ8IZ07 590 aa20■□□□□ 0.79
LSM1-205ENST00000523511 SPATA5Q8NB90 893 aa20■□□□□ 0.79
LSM1-205ENST00000523511 SAGE1Q9NXZ1 904 aa20■□□□□ 0.79
LSM1-205ENST00000523511 FPGT-TNNI3KV9GXZ4 949 aa20■□□□□ 0.79
LSM1-205ENST00000523511 PAPPA2Q9BXP8 1791 aa20■□□□□ 0.79
LSM1-205ENST00000523511 HSPA8P11142 646 aaKnown RBP19.99■□□□□ 0.79
LSM1-205ENST00000523511 IFFO2Q5TF58 517 aa19.99■□□□□ 0.79
LSM1-205ENST00000523511 CSRNP1Q96S65 589 aa19.99■□□□□ 0.79
LSM1-205ENST00000523511 ZBTB40Q9NUA8 1239 aa19.99■□□□□ 0.79
LSM1-205ENST00000523511 USP40Q9NVE5 1235 aa19.99■□□□□ 0.79
LSM1-205ENST00000523511 ARID4AP29374 1257 aaPredicted RBP19.98■□□□□ 0.79
LSM1-205ENST00000523511 DCAF15Q66K64 600 aa19.98■□□□□ 0.79
LSM1-205ENST00000523511 FAM163AQ96GL9 167 aaPredicted RBP19.98■□□□□ 0.79
LSM1-205ENST00000523511 TMEM39BQ9GZU3 492 aa19.98■□□□□ 0.79
LSM1-205ENST00000523511 HMG20BQ9P0W2 317 aa19.98■□□□□ 0.79
LSM1-205ENST00000523511 ZNF646O15015 1829 aaPredicted RBP19.97■□□□□ 0.79
LSM1-205ENST00000523511 USP2O75604 605 aaPredicted RBP19.97■□□□□ 0.79
LSM1-205ENST00000523511 FAM151AQ8WW52 585 aa19.97■□□□□ 0.79
LSM1-205ENST00000523511 NOL10Q9BSC4 688 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms