RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 POU4F3Q15319 338 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 TSNAXIP1Q2TAA8 658 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 MRPL18Q9H0U6 180 aaKnown RBP9.59□□□□□ -0.87
CPNE3-201ENST00000517354 CBX8Q9HC52 389 aa9.59□□□□□ -0.87
CPNE3-201ENST00000517354 HNRNPUQ00839 825 aaKnown RBP eCLIP9.58□□□□□ -0.88
CPNE3-201ENST00000517354 NRG1Q02297 640 aaPredicted RBP9.58□□□□□ -0.88
CPNE3-201ENST00000517354 KCNMA1Q12791 1236 aa9.58□□□□□ -0.88
CPNE3-201ENST00000517354 HP1BP3Q5SSJ5 553 aaPredicted RBP9.58□□□□□ -0.88
CPNE3-201ENST00000517354 MEI1Q5TIA1 1274 aa9.58□□□□□ -0.88
CPNE3-201ENST00000517354 SV2BQ7L1I2 683 aa9.58□□□□□ -0.88
CPNE3-201ENST00000517354 NECAB3Q96P71 396 aaPredicted RBP9.58□□□□□ -0.88
CPNE3-201ENST00000517354 EMILIN2Q9BXX0 1053 aa9.58□□□□□ -0.88
CPNE3-201ENST00000517354 RASSF7Q02833 373 aa9.57□□□□□ -0.88
CPNE3-201ENST00000517354 MRPL58Q14197 206 aaKnown RBP9.57□□□□□ -0.88
CPNE3-201ENST00000517354 BACH2Q9BYV9 841 aa9.57□□□□□ -0.88
CPNE3-201ENST00000517354 USP31Q70CQ4 1352 aa9.57□□□□□ -0.88
CPNE3-201ENST00000517354 GDF11O95390 407 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 CTSHP09668 335 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 RLBP1P12271 317 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 MAOBP27338 520 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 ST13P50502 369 aaKnown RBP9.56□□□□□ -0.88
CPNE3-201ENST00000517354 SHISA2Q6UWI4 295 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 ACAD11Q709F0 780 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 TMEM151AQ8N4L1 468 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 LENG1Q96BZ8 264 aaPredicted RBP9.56□□□□□ -0.88
CPNE3-201ENST00000517354 DCAF5Q96JK2 942 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 KCNK4Q9NYG8 393 aa9.56□□□□□ -0.88
CPNE3-201ENST00000517354 UNCXA6NJT0 531 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 NME2P22392 152 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 ARNTP27540 789 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 PDE3AQ14432 1141 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 LRRC14Q15048 493 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 FOXD4L6Q3SYB3 417 aaPredicted RBP9.55□□□□□ -0.88
CPNE3-201ENST00000517354 FOXD4L3Q6VB84 417 aaPredicted RBP9.55□□□□□ -0.88
CPNE3-201ENST00000517354 RELL1Q8IUW5 271 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 ANKRD24Q8TF21 1146 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 KCNB2Q92953 911 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 RAD18Q9NS91 495 aa9.55□□□□□ -0.88
CPNE3-201ENST00000517354 SELPP16109 830 aa9.54□□□□□ -0.88
CPNE3-201ENST00000517354 VAMP1P23763 118 aa9.54□□□□□ -0.88
CPNE3-201ENST00000517354 MAP3K11Q16584 847 aa9.54□□□□□ -0.88
CPNE3-201ENST00000517354 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
CPNE3-201ENST00000517354 SULF2Q8IWU5 870 aa9.54□□□□□ -0.88
CPNE3-201ENST00000517354 RUSC1Q9BVN2 902 aa9.54□□□□□ -0.88
CPNE3-201ENST00000517354 ZC3H12CQ9C0D7 883 aaKnown RBP9.54□□□□□ -0.88
CPNE3-201ENST00000517354 NOC4LQ9BVI4 516 aaKnown RBP9.53□□□□□ -0.88
CPNE3-201ENST00000517354 AKTIPQ9H8T0 292 aa9.53□□□□□ -0.88
CPNE3-201ENST00000517354 KRBA1A5PL33 1030 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 ENC1O14682 589 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 ADAM11O75078 769 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 EXOSC6Q5RKV6 272 aaKnown RBP9.52□□□□□ -0.89
CPNE3-201ENST00000517354 NUTM2GQ5VZR2 741 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 TMEM130Q8N3G9 435 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 UBASH3BQ8TF42 649 aa9.52□□□□□ -0.89
CPNE3-201ENST00000517354 LOC100289279A0A1B0GTE1 492 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 SCAMP3O14828 347 aaKnown RBP9.51□□□□□ -0.89
CPNE3-201ENST00000517354 CELA3AP09093 270 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 GSTP1P09211 210 aaKnown RBP9.51□□□□□ -0.89
CPNE3-201ENST00000517354 IREB2P48200 963 aaKnown RBP9.51□□□□□ -0.89
CPNE3-201ENST00000517354 TTBK2Q6IQ55 1244 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 WFDC12Q8WWY7 111 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 RNF208Q9H0X6 261 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 KIAA1522Q9P206 1035 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-201ENST00000517354 GGT7Q9UJ14 662 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 CYP8B1Q9UNU6 501 aa9.51□□□□□ -0.89
CPNE3-201ENST00000517354 SART1O43290 800 aaKnown RBP9.5□□□□□ -0.89
CPNE3-201ENST00000517354 SLFN14P0C7P3 912 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 ZNF76P36508 570 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 PWP1Q13610 501 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 MAP1SQ66K74 1059 aaPredicted RBP9.5□□□□□ -0.89
CPNE3-201ENST00000517354 LLGL2Q6P1M3 1020 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 C12orf50Q8NA57 414 aaPredicted RBP9.5□□□□□ -0.89
CPNE3-201ENST00000517354 ACSBG1Q96GR2 724 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 TRIM56Q9BRZ2 755 aaKnown RBP9.5□□□□□ -0.89
CPNE3-201ENST00000517354 CYP4F12Q9HCS2 524 aa9.5□□□□□ -0.89
CPNE3-201ENST00000517354 C1QTNF9BB2RNN3 333 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 F8W735 103 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-201ENST00000517354 PAGE1O75459 146 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 ALX3O95076 343 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 WISP1O95388 367 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 GLB1P16278 677 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 BMP6P22004 513 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 PCNX4Q63HM2 1172 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 FDX2Q6P4F2 183 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 HS2ST1Q7LGA3 356 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 RNF34Q969K3 372 aa9.49□□□□□ -0.89
CPNE3-201ENST00000517354 MEGF11A6BM72 1044 aa9.48□□□□□ -0.89
CPNE3-201ENST00000517354 TM4SF5O14894 197 aa9.48□□□□□ -0.89
CPNE3-201ENST00000517354 GBP2P32456 591 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-201ENST00000517354 GATA4P43694 442 aa9.48□□□□□ -0.89
CPNE3-201ENST00000517354 KIAA1211Q6ZU35 1233 aa9.48□□□□□ -0.89
CPNE3-201ENST00000517354 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.48□□□□□ -0.89
CPNE3-201ENST00000517354 AGGF1Q8N302 714 aaeCLIP9.48□□□□□ -0.89
CPNE3-201ENST00000517354 CEP41Q9BYV8 373 aa9.48□□□□□ -0.89
CPNE3-201ENST00000517354 MINDY4BA8MYZ0 360 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 LIG1P18858 919 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 LIG3P49916 1009 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 ADGRE1Q14246 886 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 CD163Q86VB7 1156 aa9.47□□□□□ -0.89
CPNE3-201ENST00000517354 TXNRD3Q86VQ6 643 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms