RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 STAP2Q9UGK3 403 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 CPA4Q9UI42 421 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 H7C1W4 665 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 PLIN1O60240 522 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 FMNL1O95466 1100 aaPredicted RBP14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 CETPP11597 493 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 PSMC4P43686 418 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 NEXNQ0ZGT2 675 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 SPDYE2Q495Y8 402 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 KSR2Q6VAB6 950 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 NKX2-3Q8TAU0 364 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 RAET1EQ8TD07 263 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 TEPSINQ96N21 525 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 RNF208Q9H0X6 261 aa14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 RANBP2P49792 3224 aaKnown RBP14.27□□□□□ -0.13
LIMCH1-221ENST00000515785 GNRH1P01148 92 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 SLC4A2P04920 1241 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 IL1R1P14778 569 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 GRK4P32298 578 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 GJA8P48165 433 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 PRMT2P55345 433 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 TNFAIP1Q13829 316 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 ZNF804AQ7Z570 1209 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 UBE2Q1Q7Z7E8 422 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 TRIM47Q96LD4 638 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 SRRDQ9UH36 339 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 A0A0C4DFX4 3053 aa14.26□□□□□ -0.13
LIMCH1-221ENST00000515785 IRS2Q9Y4H2 1338 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 NEURL1BA8MQ27 555 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 ZBTB22O15209 634 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 GJB1P08034 283 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 ZNF853P0CG23 659 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 OSBPP22059 807 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 MNX1P50219 401 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 CCDC30Q5VVM6 783 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 ZKSCAN4Q969J2 545 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 TTF2Q9UNY4 1162 aaKnown RBP14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 RIPOR2Q9Y4F9 1068 aa14.25□□□□□ -0.13
LIMCH1-221ENST00000515785 ANKRD18BA2A2Z9 1011 aa14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 SPDYE5A6NIY4 337 aa14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 EVI5O60447 810 aa14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 FARP2O94887 1054 aaPredicted RBP14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 HOXD10P28358 340 aa14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 FKBP1AP62942 108 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 C17orf99Q6UX52 265 aa14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 DZIP1LQ8IYY4 767 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-221ENST00000515785 MYPNQ86TC9 1320 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 IRF6O14896 467 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 CSF1RP07333 972 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 TNNI2P48788 182 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 CACNB3P54284 484 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 SNAPC2Q13487 334 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 WDR43Q15061 677 aaKnown RBP eCLIP14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 C15orf52Q6ZUT6 534 aaKnown RBP14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 ERO1BQ86YB8 467 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 U2AF1L4Q8WU68 220 aaKnown RBP14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 UNC93B1Q9H1C4 597 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 ADAMTS8Q9UP79 889 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 CHMP3Q9Y3E7 222 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 SNCAIPQ9Y6H5 919 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 COL6A3P12111 3177 aa14.23□□□□□ -0.13
LIMCH1-221ENST00000515785 TFRCP02786 760 aaKnown RBP14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 GNAI1P63096 354 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 UBXN2AP68543 259 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 MFSD14BQ5SR56 506 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 Q7L0L9 218 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 G2E3Q7L622 706 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 DEFB123Q8N688 67 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 TSPYL6Q8N831 410 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 WRNIP1Q96S55 665 aa14.22□□□□□ -0.13
LIMCH1-221ENST00000515785 CRKP46108 304 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 PRKCZQ05513 592 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 GCKRQ14397 625 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 PLA2G12BQ9BX93 195 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 ZCCHC17Q9NP64 241 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 IFT57Q9NWB7 429 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 SERPINA10Q9UK55 444 aa14.21□□□□□ -0.13
LIMCH1-221ENST00000515785 A0A1W2PPC1 479 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 PDHXO00330 501 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 SGPL1O95470 568 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 PPIL2Q13356 520 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 ZNF594Q96JF6 807 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 GABRQQ9UN88 632 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 ARAP2Q8WZ64 1704 aa14.2□□□□□ -0.14
LIMCH1-221ENST00000515785 A0A1B0GUL6 1792 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 FAM205AQ6ZU69 1335 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 GYG1P46976 350 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 CASP7P55210 303 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 IFIT5Q13325 482 aaKnown RBP14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 RALBP1Q15311 655 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 GRIK5Q16478 980 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 MIGA2Q7L4E1 593 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 STK31Q9BXU1 1019 aa14.19□□□□□ -0.14
LIMCH1-221ENST00000515785 ADCY3O60266 1144 aa14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 ELNP15502 786 aa14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 ANKRD23Q86SG2 305 aa14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 TDRD7Q8NHU6 1098 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-221ENST00000515785 DEFB118Q96PH6 123 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms