RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 BMP6P22004 513 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 RANGAP1P46060 587 aaPredicted RBP8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 LIG3P49916 1009 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 RACK1P63244 317 aaKnown RBP8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 GSTM4Q03013 218 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 PPP2R3AQ06190 1150 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 KCNMA1Q12791 1236 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 FOXD4L6Q3SYB3 417 aaPredicted RBP8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 PCNX4Q63HM2 1172 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 FAM117BQ6P1L5 589 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 FOXD4L3Q6VB84 417 aaPredicted RBP8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 RSRP1Q9BUV0 290 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 KCNK4Q9NYG8 393 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 MKL2Q9ULH7 1088 aa8.46□□□□□ -1.06
HMGCS1-207ENST00000514610 DDX3YO15523 660 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 NME2P22392 152 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 TTBK2Q6IQ55 1244 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 SULF2Q8IWU5 870 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 FMR1NBQ8N0W7 255 aaPredicted RBP8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 DTWD1Q8N5C7 304 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 PHC3Q8NDX5 983 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 SRA1Q9HD15 236 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 TLR6Q9Y2C9 796 aa8.45□□□□□ -1.06
HMGCS1-207ENST00000514610 ECEL1O95672 775 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 CTSBP07858 339 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 ERCC5P28715 1186 aaPredicted RBP8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 PDZD3Q86UT5 571 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 USP48Q86UV5 1035 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 FBXO11Q86XK2 927 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 KLHL23Q8NBE8 558 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 GRIN3AQ8TCU5 1115 aa8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 DDX41Q9UJV9 622 aaKnown RBP8.44□□□□□ -1.06
HMGCS1-207ENST00000514610 LOC100996750A0A140TA64 210 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 DLL1O00548 723 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 TFE3P19532 575 aaPredicted RBP8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 ARNTP27540 789 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 ARL4DP49703 201 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 NLRP12P59046 1061 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 SUZ12Q15022 739 aaKnown RBP8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 MPRIPQ6WCQ1 1025 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 AGMOQ6ZNB7 445 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 MAP4K3Q8IVH8 894 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 RHOVQ96L33 236 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 TMEM74Q96NL1 305 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 KRTAP4-6Q9BYQ5 205 aa8.43□□□□□ -1.06
HMGCS1-207ENST00000514610 GBP2P32456 591 aaPredicted RBP8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 CD68P34810 354 aaPredicted RBP8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 ZNF252P-AS1Q0IIN9 211 aa8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 AP3B2Q13367 1082 aa8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 ADAMTS1Q9UHI8 967 aa8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 PCDHB5Q9Y5E4 795 aa8.42□□□□□ -1.06
HMGCS1-207ENST00000514610 MINDY4BA8MYZ0 360 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 WISP1O95388 367 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 DLGAP3O95886 979 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 GSTP1P09211 210 aaKnown RBP8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 MAOBP27338 520 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 COL8A1P27658 744 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 RPS26P62854 115 aaKnown RBP8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 RAC1P63000 192 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 RELL1Q8IUW5 271 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 DDX54Q8TDD1 881 aaKnown RBP8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 UBASH3BQ8TF42 649 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 ZC3H12CQ9C0D7 883 aaKnown RBP8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 TGIF2Q9GZN2 237 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 ACBD3Q9H3P7 528 aa8.41□□□□□ -1.06
HMGCS1-207ENST00000514610 LOC100289279A0A1B0GTE1 492 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 PF4P02776 101 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 RLBP1P12271 317 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 GARTP22102 1010 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 POU4F3Q15319 338 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 PODNQ7Z5L7 613 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 BEND7Q8N7W2 519 aaPredicted RBP8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 USP26Q9BXU7 913 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 CBX8Q9HC52 389 aa8.4□□□□□ -1.06
HMGCS1-207ENST00000514610 CYP11A1P05108 521 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 TNNI2P48788 182 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 FAM160A1Q05DH4 1040 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 PTPN11Q06124 597 aaPredicted RBP8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 TRIM28Q13263 835 aaKnown RBP8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 PWP1Q13610 501 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 LLGL2Q6P1M3 1020 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 ZNF654Q8IZM8 581 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 GAL3ST3Q96A11 431 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 CCDC86Q9H6F5 360 aaKnown RBP8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 SAMM50Q9Y512 469 aa8.39□□□□□ -1.07
HMGCS1-207ENST00000514610 SPDYE3A6NKU9 549 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 PIK3R2O00459 728 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 ELNP15502 786 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 LMNB2Q03252 620 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 CAMK2GQ13555 558 aaPredicted RBP8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 SEPT6Q14141 434 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 GRIK4Q16099 956 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 SHISA2Q6UWI4 295 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 CORO1BQ9BR76 489 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 EMILIN2Q9BXX0 1053 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 CCSER2Q9H7U1 834 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 KCNQ5Q9NR82 932 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 CACNA2D2Q9NY47 1150 aa8.38□□□□□ -1.07
HMGCS1-207ENST00000514610 NOP53Q9NZM5 478 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms