RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 NUP88Q99567 741 aaPredicted RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 SPON1Q9HCB6 807 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 PPEF1O14829 653 aaPredicted RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 TFCP2Q12800 502 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 GCKRQ14397 625 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 BMP2KLQ5H9B9 411 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 TTC22Q5TAA0 569 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 OTUD6AQ7L8S5 288 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 BRF1Q92994 677 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 NOX5Q96PH1 765 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 GPCPD1Q9NPB8 672 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 PIM2Q9P1W9 311 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MRPL11Q9Y3B7 192 aaKnown RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 RBM8AQ9Y5S9 174 aaKnown RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 MYCLP12524 364 aaPredicted RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 ASIC1P78348 528 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 NSMFQ6X4W1 530 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 LMBR1Q8WVP7 490 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 TMCO5BA8MYB1 307 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 CCDC14Q49A88 953 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MAP9Q49MG5 647 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 CCDC183Q5T5S1 534 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 APPBP2Q92624 585 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MAP7D2Q96T17 732 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 ARID3AQ99856 593 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 ARHGEF35A5YM69 484 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 SERPINB2P05120 415 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 SFPQP23246 707 aaKnown RBP eCLIP4.81□□□□□ -1.64
VCAN-209ENST00000513016 SP4Q02446 784 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 EP400NLQ6ZTU2 488 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MEIS3Q99687 375 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 PAGR1Q9BTK6 254 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 NACA2Q9H009 215 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 ZMYND15Q9H091 742 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MLXIPQ9HAP2 919 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 PNMA3Q9UL41 463 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 ZBTB21Q9ULJ3 1066 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 ATF5Q9Y2D1 282 aaPredicted RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 MRVI1Q9Y6F6 885 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 FSD2A1L4K1 749 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 FAM43AQ8N2R8 423 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 EHBP1Q8NDI1 1231 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 TSHZ2Q9NRE2 1034 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 WDR17Q8IZU2 1322 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 MAPKBP1O60336 1514 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 BLMP54132 1417 aaPredicted RBP4.81□□□□□ -1.64
VCAN-209ENST00000513016 PRAG1Q86YV5 1406 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 A0A1B0GUL7 405 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 H0YHG0 523 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 SEMA3EO15041 775 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 STX10O60499 249 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 PHKG2P15735 406 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 TRPC3Q13507 836 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 CIAPIN1Q6FI81 312 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 FCHSD1Q86WN1 690 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 CCDC17Q96LX7 622 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 CLIP2Q9UDT6 1046 aa4.81□□□□□ -1.64
VCAN-209ENST00000513016 GOLGA6L9A6NEM1 432 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 NEMFO60524 1076 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 IL6STP40189 918 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 KCTD2Q14681 263 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 ZNF771Q7L3S4 317 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 MTERF4Q7Z6M4 381 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 DPP9Q86TI2 863 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 TTLL6Q8N841 843 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 C8orf58Q8NAV2 365 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 SPC24Q8NBT2 197 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 TSPYL1Q9H0U9 437 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 ARPP21Q9UBL0 812 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 AFF2P51816 1311 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 ARHGEF37A1IGU5 675 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 H0YCG3 227 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 GJB2P29033 226 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 PLCD1P51178 756 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 YWHAEP62258 255 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 SLC10A4Q96EP9 437 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 JPH2Q9BR39 696 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 P4HA1P13674 534 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 SYKP43405 635 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 HDAC1Q13547 482 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 ZYXQ15942 572 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 CWF19L2Q2TBE0 894 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 KRT25Q7Z3Z0 450 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 CPXCR1Q8N123 301 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 FAM200AQ8TCP9 573 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 NSMCE1Q8WV22 266 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 KIFAP3Q92845 792 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 RSPH6AQ9H0K4 717 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 IKBKGQ9Y6K9 419 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 IQCA1LA6NCM1 817 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 TMOD1P28289 359 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 CYLC1P35663 651 aaPredicted RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 SMC1AQ14683 1233 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 IWS1Q96ST2 819 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 BICC1Q9H694 974 aaKnown RBP4.8□□□□□ -1.64
VCAN-209ENST00000513016 MMRN2Q9H8L6 949 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 FRMD4BQ9Y2L6 1034 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 A0A1W2PP64 1363 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 NPR1P16066 1061 aa4.8□□□□□ -1.64
VCAN-209ENST00000513016 GSDMDP57764 484 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms