RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PUF60Q9UHX1 559 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 A0A087WWV3 80 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 KRT40Q6A162 431 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 HELBQ8NG08 1087 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 FTOQ9C0B1 505 aaKnown RBP eCLIP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 ZHX3Q9H4I2 956 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 RNF216Q9NWF9 866 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 PTPRMP28827 1452 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 CTAGE9A4FU28 777 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 PDIA3P30101 505 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 CDC25BP30305 580 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 SPAG1Q07617 926 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 SPECC1Q5M775 1068 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 NSUN7Q8NE18 718 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 PHKBQ93100 1093 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 REREQ9P2R6 1566 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 KIAA0754O94854 1291 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 CYP7A1P22680 504 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 NDUFA8P51970 172 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 PPP2R3AQ06190 1150 aa9.6□□□□□ -0.87
LIMCH1-216ENST00000512820 GOLGA6L10A6NI86 522 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 CUTAO60888 179 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 A1BGP04217 495 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 PFKFB1P16118 471 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 UBA7P41226 1012 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 MTIF2P46199 727 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ERCC6LQ2NKX8 1250 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ZNF569Q5MCW4 686 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 MAGEB6Q8N7X4 407 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 SMARCC1Q92922 1105 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 TMEM87BQ96K49 555 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 MKNK2Q9HBH9 465 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 RCOR1Q9UKL0 485 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ADGRB1O14514 1584 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 AKR1B15C9JRZ8 316 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 USO1O60763 962 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 DMTNQ08495 405 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 RESTQ13127 1097 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ZBTB9Q96C00 473 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 CENPHQ9H3R5 247 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 BMP2KQ9NSY1 1161 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 IQSEC3Q9UPP2 1182 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 A2ML1A8K2U0 1454 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ARHGAP6O43182 974 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ZAP70P43403 619 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 IFIT1BQ5T764 474 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 ZKSCAN3Q9BRR0 538 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 RMND1Q9NWS8 449 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 CRB1P82279 1406 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 RILPL1Q5EBL4 403 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 CABP5Q9NP86 173 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 PLEKHG1Q9ULL1 1385 aa9.59□□□□□ -0.87
LIMCH1-216ENST00000512820 INO80Q9ULG1 1556 aaPredicted RBP9.59□□□□□ -0.88
LIMCH1-216ENST00000512820 POLR2DO15514 142 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 USP5P45974 858 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 ZFP91Q96JP5 570 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 TRIM47Q96LD4 638 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 MYL10Q9BUA6 226 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 NFE2L3Q9Y4A8 694 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 CLIC4Q9Y696 253 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 MTX1Q13505 466 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 PNOCQ13519 176 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 DIS3L2Q8IYB7 885 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 SPTLC3Q9NUV7 552 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 RPAP1Q9BWH6 1393 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 IRS4O14654 1257 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 MBD4O95243 580 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 KIF5BP33176 963 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 TOB2Q14106 344 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 CTR9Q6PD62 1173 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 MIGA1Q8NAN2 632 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 JADE2Q9NQC1 790 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 RTEL1Q9NZ71 1219 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 TSPY2A6NKD2 308 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 CMA1P23946 247 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 CACNA2D4Q7Z3S7 1137 aa9.58□□□□□ -0.88
LIMCH1-216ENST00000512820 A0A1W2PQ27 194 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 A0A1W2PQ64 194 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 A0A1W2PQD8 194 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 RHOXF2BP0C7M4 288 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 TRIM21P19474 475 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 PAFAH1B1P43034 410 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 PIP4K2BP78356 416 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 IGSF22Q8N9C0 903 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 MLKLQ8NB16 471 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 RHOXF2Q9BQY4 288 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 IL25Q9H293 177 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 GNAT2P19087 354 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 ETF1P62495 437 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 RBM6P78332 1123 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 TCP11L1Q9NUJ3 509 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 KRT2P35908 639 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 STAT6P42226 847 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 CADPS2Q86UW7 1296 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 EHBP1Q8NDI1 1231 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 FBXO18Q8NFZ0 1043 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 TAF4BQ92750 862 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 PGBD1Q96JS3 809 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF652Q9Y2D9 606 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms