RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CHMP4CQ96CF2 233 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 CLIC6Q96NY7 704 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 ALG1Q9BT22 464 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 INCENPQ9NQS7 918 aa10.73□□□□□ -0.69
LIMCH1-215ENST00000512632 ATF3P18847 181 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 NLRP12P59046 1061 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 NCAPHQ15003 741 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 MICU3Q86XE3 530 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 ZNF397Q8NF99 534 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 DPF2Q92785 391 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 MYL10Q9BUA6 226 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 SENP2Q9HC62 589 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 UBE2Q2LH0YL09 131 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 SYKP43405 635 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 TPM4P67936 248 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 TRDNQ13061 729 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 FAM177A1Q8N128 213 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 APPBP2Q92624 585 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 ERO1AQ96HE7 468 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 PPP1R13BQ96KQ4 1090 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 NEDD4P46934 1319 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 IDH1O75874 414 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 SERPINC1P01008 464 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 EVCP57679 992 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 SLIT3O75094 1523 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 LRRFIP1Q32MZ4 808 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 SPECC1Q5M775 1068 aa10.72□□□□□ -0.69
LIMCH1-215ENST00000512632 GPTP24298 496 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 CFAP100Q494V2 611 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 TOM1L2Q6ZVM7 507 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 BRAPQ7Z569 592 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 VPS37DQ86XT2 251 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 DNAI1Q9UI46 699 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 CMA1P23946 247 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 PNOCQ13519 176 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 SLC9C2Q5TAH2 1124 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 IMPACTQ9P2X3 320 aa10.71□□□□□ -0.69
LIMCH1-215ENST00000512632 C5P01031 1676 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 MROH7-TTC4A0A0A0MT08 1334 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 UBASH3AP57075 661 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 METTL24Q5JXM2 366 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 KRT40Q6A162 431 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 ST7Q9NRC1 585 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 AKAP2Q9Y2D5 859 aa10.71□□□□□ -0.7
LIMCH1-215ENST00000512632 B4E1Z4 1266 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 NRDCO43847 1150 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 METAP2P50579 478 aaKnown RBP eCLIP10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 IFIT5Q13325 482 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 SLC39A14Q15043 492 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 CCDC82Q8N4S0 544 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 ZCRB1Q8TBF4 217 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 MORC2Q9Y6X9 1032 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 FER1L4A9Z1Z3 1794 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 C1orf167Q5SNV9 1468 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 CIAO1O76071 339 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 ZFYP08048 801 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 LDHAL6AQ6ZMR3 332 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 NFXL1Q6ZNB6 911 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 CYB5R4Q7L1T6 521 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 CCDC150Q8NCX0 1101 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 ATP2B1P20020 1258 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 TMX1Q9H3N1 280 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 CDC27P30260 824 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 SHC4Q6S5L8 630 aa10.7□□□□□ -0.7
LIMCH1-215ENST00000512632 KIF20AO95235 890 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 TBC1D10CQ8IV04 446 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 KRT222Q8N1A0 295 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 UTP14AQ9BVJ6 771 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 TMEM232C9JQI7 657 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 MCAMP43121 646 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 TCIRG1Q13488 830 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 FANCLQ9NW38 375 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 ANGEL1Q9UNK9 670 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 FOXN1O15353 648 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 RGPD5Q99666 1765 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 KIF2AO00139 706 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 URI1O94763 535 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 LONRF3Q496Y0 759 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 FOXP4Q8IVH2 680 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 HELBQ8NG08 1087 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 NBPF3Q9H094 633 aa10.69□□□□□ -0.7
LIMCH1-215ENST00000512632 CPLX2Q6PUV4 134 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 FBXL16Q8N461 479 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 HSD3B7Q9H2F3 369 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PRDM11Q9NQV5 511 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 CNNM1Q9NRU3 951 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PCDHA5Q9Y5H7 936 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 ARHGAP29Q52LW3 1261 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PDILTQ8N807 584 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 ATG3Q9NT62 314 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 SNAP23O00161 211 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 SLFN14P0C7P3 912 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 IARSP41252 1262 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 CNNM3Q8NE01 707 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 BPIFA3Q9BQP9 254 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 ISCA1Q9BUE6 129 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 TOMM22Q9NS69 142 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 ZNF446Q9NWS9 450 aa10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 PSDA5PKW4 1024 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-215ENST00000512632 ETF1P62495 437 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms