RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ANKRD20A4Q4UJ75 823 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ANKRD20A8PQ5CZ79 823 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ANKRD20A2Q5SQ80 823 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ANKRD20A1Q5TYW2 823 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 LRSAM1Q6UWE0 723 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 MRFAP1L1Q96HT8 127 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 SELENOSQ9BQE4 189 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KIF9Q9HAQ2 790 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 TOMM22Q9NS69 142 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 HOMER2Q9NSB8 354 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 NDUFA13Q9P0J0 144 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 KDM5AP29375 1690 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 TNNC1P63316 161 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 PPP2R5AQ15172 486 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 CCDC14Q49A88 953 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 SYCP2LQ5T4T6 812 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 MICAL1Q8TDZ2 1067 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 ATRIPQ8WXE1 791 aa4.04□□□□□ -1.76
USP53-205ENST00000509769 BMP2KQ9NSY1 1161 aaPredicted RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 DNAJC17Q9NVM6 304 aaKnown RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 SCHIP1Q9P0W5 487 aaPredicted RBP4.04□□□□□ -1.76
USP53-205ENST00000509769 NUP153P49790 1475 aaKnown RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 CCDC69A6NI79 296 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 CAPN15O75808 1086 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 MSL3P1P0C860 447 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 TRIM14Q14142 442 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ZSCAN26Q16670 478 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 CCDC62Q6P9F0 684 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 MAATS1Q7Z4T9 603 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ST13P4Q8IZP2 240 aaPredicted RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 CNTROBQ8N137 903 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 CLUAP1Q96AJ1 413 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 RIOK1Q9BRS2 568 aaKnown RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 JADE2Q9NQC1 790 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ABCF2Q9UG63 623 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 DIP2AQ14689 1571 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 SLIT1O75093 1534 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 NEXMIFQ5QGS0 1516 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 RGPD1P0DJD0 1748 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 EIF3CLB5ME19 914 aaKnown RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 SRGAP3O43295 1099 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 KRT6AP02538 564 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 KRT6BP04259 564 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ATICP31939 592 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 KRT6CP48668 564 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 PSMC1P62191 440 aaKnown RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 APOBRQ0VD83 1088 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 GRAMD4Q6IC98 578 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 BBOF1Q8ND07 529 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 GABPB2Q8TAK5 448 aaPredicted RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 FAM71BQ8TC56 605 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 AIDAQ96BJ3 306 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ZNF653Q96CK0 615 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 STAMBPL1Q96FJ0 436 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 MPHOSPH8Q99549 860 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 TTC1Q99614 292 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 FSD1Q9BTV5 496 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 RRBP1Q9P2E9 1410 aaKnown RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 SYCP2Q9BX26 1530 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 RAD21O60216 631 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 ATP5HO75947 161 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 RAP1GDS1P52306 607 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 LETM2Q2VYF4 491 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 HDGFL2Q7Z4V5 671 aaPredicted RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 ZNF483Q8TF39 744 aaPredicted RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 EXOC4Q96A65 974 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 GJD4Q96KN9 370 aaPredicted RBP4.03□□□□□ -1.76
USP53-205ENST00000509769 NKIRAS1Q9NYS0 192 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 DKK3Q9UBP4 350 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 AKAP2Q9Y2D5 859 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 TACC3Q9Y6A5 838 aa4.03□□□□□ -1.76
USP53-205ENST00000509769 NDUFAB1O14561 156 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 ZNF500O60304 480 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 BMP15O95972 392 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 BRPF1P55201 1214 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 OLR1P78380 273 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 TMEM132AQ24JP5 1023 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 MUM1Q2TAK8 710 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 ATL3Q6DD88 541 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 CCDC186Q7Z3E2 898 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 MAP7D3Q8IWC1 876 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 AFAP1Q8N556 730 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 EFHD2Q96C19 240 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 LTV1Q96GA3 475 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 ZFP91Q96JP5 570 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 IMPACTQ9P2X3 320 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 RRP7AQ9Y3A4 280 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 SESN1Q9Y6P5 492 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 POLD1P28340 1107 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 FAM160A1Q05DH4 1040 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 RASIP1Q5U651 963 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 GKAP1Q5VSY0 366 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 ZC3H18Q86VM9 953 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 CCDC124Q96CT7 223 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 MAK16Q9BXY0 300 aaKnown RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 PARP2Q9UGN5 583 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 GSTTP1A0A1W2PQM5 241 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 A0A1W2PRG0 241 aa4.02□□□□□ -1.77
USP53-205ENST00000509769 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.02□□□□□ -1.77
USP53-205ENST00000509769 GPR162Q16538 588 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms