RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.71□□□□□ -1.02
NUP54-204ENST00000506098 KCNQ5Q9NR82 932 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 FOXD4L1Q9NU39 408 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 ZNRF3Q9ULT6 936 aa8.71□□□□□ -1.02
NUP54-204ENST00000506098 SRCAPQ6ZRS2 3230 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 DCAF8L1A6NGE4 600 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 RNF113AO15541 343 aaKnown RBP8.7□□□□□ -1.02
NUP54-204ENST00000506098 MAP3K12Q12852 859 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 CHAF1AQ13111 956 aaPredicted RBP8.7□□□□□ -1.02
NUP54-204ENST00000506098 MFSD14BQ5SR56 506 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 ZMYM1Q5SVZ6 1142 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 ZNF384Q8TF68 577 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 JDP2Q8WYK2 163 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 NSUN4Q96CB9 384 aaKnown RBP8.7□□□□□ -1.02
NUP54-204ENST00000506098 MRIQ9BWK5 157 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 BACH2Q9BYV9 841 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 HELLSQ9NRZ9 838 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 LRP2BPQ9P2M1 347 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 ABCF2Q9UG63 623 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 UTRNP46939 3433 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 WDR90Q96KV7 1748 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 MYO3BQ8WXR4 1341 aa8.7□□□□□ -1.02
NUP54-204ENST00000506098 SIPA1L1O43166 1804 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 ATAD5Q96QE3 1844 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 IDH1O75874 414 aaKnown RBP8.69□□□□□ -1.02
NUP54-204ENST00000506098 LDHBP07195 334 aaKnown RBP8.69□□□□□ -1.02
NUP54-204ENST00000506098 PDE6AP16499 860 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 PRDX5P30044 214 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 MMP14P50281 582 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 CXCL9Q07325 125 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 NMIQ13287 307 aaPredicted RBP8.69□□□□□ -1.02
NUP54-204ENST00000506098 GRIK5Q16478 980 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 GPR162Q16538 588 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 SLC9C2Q5TAH2 1124 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 CASC1Q6TDU7 716 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 CERS5Q8N5B7 392 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 RUFY2Q8WXA3 655 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 APPBP2Q92624 585 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 FAM163AQ96GL9 167 aaPredicted RBP8.69□□□□□ -1.02
NUP54-204ENST00000506098 GMLQ99445 158 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 RAD50Q92878 1312 aa8.69□□□□□ -1.02
NUP54-204ENST00000506098 A0A0D9SFI3 127 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 PSMD14O00487 310 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 SGSM2O43147 1006 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 EPB41L2O43491 1005 aaKnown RBP8.68□□□□□ -1.02
NUP54-204ENST00000506098 HDLBPQ00341 1268 aaKnown RBP8.68□□□□□ -1.02
NUP54-204ENST00000506098 MECOMQ03112 1051 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 TNIP1Q15025 636 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 MCMDC2Q4G0Z9 681 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 CIAPIN1Q6FI81 312 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 RSBN1LQ6PCB5 846 aaPredicted RBP8.68□□□□□ -1.02
NUP54-204ENST00000506098 CWC27Q6UX04 472 aaKnown RBP8.68□□□□□ -1.02
NUP54-204ENST00000506098 POTEDQ86YR6 584 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 MAGEB6Q8N7X4 407 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 AGBL3Q8NEM8 1001 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 OSBP2Q969R2 916 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 FAM227BQ96M60 508 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 ESYT1Q9BSJ8 1104 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 DIAPH3Q9NSV4 1193 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 RAI14Q9P0K7 980 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 JAG2Q9Y219 1238 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 MAST3O60307 1309 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 ZNF532Q9HCE3 1301 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 ZC3H4Q9UPT8 1303 aaKnown RBP8.68□□□□□ -1.02
NUP54-204ENST00000506098 MYH4Q9Y623 1939 aa8.68□□□□□ -1.02
NUP54-204ENST00000506098 GAKO14976 1311 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 CHGBP05060 677 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 LDHCP07864 332 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 RPS12P25398 132 aaKnown RBP8.67□□□□□ -1.02
NUP54-204ENST00000506098 EIF6P56537 245 aaKnown RBP8.67□□□□□ -1.02
NUP54-204ENST00000506098 PPP4CP60510 307 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 GSTO1P78417 241 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 SLFNL1Q499Z3 407 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 NAA16Q6N069 864 aaPredicted RBP8.67□□□□□ -1.02
NUP54-204ENST00000506098 HHIPL2Q6UWX4 724 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 SLF2Q8IX21 1173 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 PUS7LQ9H0K6 701 aaKnown RBP8.67□□□□□ -1.02
NUP54-204ENST00000506098 IL25Q9H293 177 aa8.67□□□□□ -1.02
NUP54-204ENST00000506098 TRPM7Q96QT4 1865 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 MROH7-TTC4A0A0A0MT08 1334 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 GPR75-ASB3A0A0A6YYF3 556 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 RAD17O75943 681 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 SEC24BO95487 1268 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 CYP7A1P22680 504 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 MFAP1P55081 439 aaKnown RBP8.66□□□□□ -1.02
NUP54-204ENST00000506098 C9orf131Q5VYM1 1079 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 ADGRA1Q86SQ6 560 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 DZIP1Q86YF9 867 aaKnown RBP8.66□□□□□ -1.02
NUP54-204ENST00000506098 CERS3Q8IU89 383 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 DPF2Q92785 391 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 FBXW7Q969H0 707 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 SEC62Q99442 399 aaKnown RBP8.66□□□□□ -1.02
NUP54-204ENST00000506098 RIOK1Q9BRS2 568 aaKnown RBP8.66□□□□□ -1.02
NUP54-204ENST00000506098 MXD3Q9BW11 206 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 SERPINA10Q9UK55 444 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 TTF2Q9UNY4 1162 aaKnown RBP8.66□□□□□ -1.02
NUP54-204ENST00000506098 MYH6P13533 1939 aa8.66□□□□□ -1.02
NUP54-204ENST00000506098 RPAP1Q9BWH6 1393 aaPredicted RBP8.65□□□□□ -1.02
NUP54-204ENST00000506098 CCDC171Q6TFL3 1326 aa8.65□□□□□ -1.02
NUP54-204ENST00000506098 ZNF541Q9H0D2 1346 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms