RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 SHISA2Q6UWI4 295 aa6.78□□□□□ -1.32
TOPBP1-204ENST00000505804 FOXD4L3Q6VB84 417 aaPredicted RBP6.78□□□□□ -1.32
TOPBP1-204ENST00000505804 SV2BQ7L1I2 683 aa6.78□□□□□ -1.32
TOPBP1-204ENST00000505804 TRIM56Q9BRZ2 755 aaKnown RBP6.78□□□□□ -1.32
TOPBP1-204ENST00000505804 CELA3AP09093 270 aa6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 SPATA31C1P0DKV0 1188 aa6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 IGF2-ASQ6U949 168 aa6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 NPM2Q86SE8 214 aaKnown RBP6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 DDX54Q8TDD1 881 aaKnown RBP6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 STK35Q8TDR2 534 aa6.77□□□□□ -1.33
TOPBP1-204ENST00000505804 SELPP16109 830 aa6.76□□□□□ -1.33
TOPBP1-204ENST00000505804 MAP3K11Q16584 847 aa6.76□□□□□ -1.33
TOPBP1-204ENST00000505804 SCAMP3O14828 347 aaKnown RBP6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 ECEL1O95672 775 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 CYP11A1P05108 521 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 BMP6P22004 513 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 NME2P22392 152 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 MAOBP27338 520 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 ARNTP27540 789 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 POU4F3Q15319 338 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 SULF2Q8IWU5 870 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 UBASH3BQ8TF42 649 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 NOC4LQ9BVI4 516 aaKnown RBP6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 USP26Q9BXU7 913 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 ZC3H12CQ9C0D7 883 aaKnown RBP6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 NRSN2Q9GZP1 204 aa6.75□□□□□ -1.33
TOPBP1-204ENST00000505804 F6X3S4 739 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 WISP1O95388 367 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 DLGAP3O95886 979 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 CTSBP07858 339 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 AP3B2Q13367 1082 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 DUOXA2Q1HG44 320 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 RASIP1Q5U651 963 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 C9orf131Q5VYM1 1079 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 GRIN3AQ8TCU5 1115 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 DCAF11Q8TEB1 546 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 CORO1BQ9BR76 489 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 CBX8Q9HC52 389 aa6.74□□□□□ -1.33
TOPBP1-204ENST00000505804 LOC100289279A0A1B0GTE1 492 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 KRBA1A5PL33 1030 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 RNF225M0QZC1 329 aaPredicted RBP6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 EIF4EBP3O60516 100 aaPredicted RBP6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 ZNF76P36508 570 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 FANCCQ00597 558 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 PCNX4Q63HM2 1172 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 TTBK2Q6IQ55 1244 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 MPRIPQ6WCQ1 1025 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 PDZD3Q86UT5 571 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 RNF34Q969K3 372 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 LENG1Q96BZ8 264 aaPredicted RBP6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 MRPL18Q9H0U6 180 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 COPRSQ9NQ92 184 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 GGT7Q9UJ14 662 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 USP21Q9UK80 565 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 TLR6Q9Y2C9 796 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 SAMM50Q9Y512 469 aa6.73□□□□□ -1.33
TOPBP1-204ENST00000505804 ALX3O95076 343 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 APBA3O96018 575 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 GSTP1P09211 210 aaKnown RBP6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 LIG3P49916 1009 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 HDLBPQ00341 1268 aaKnown RBP6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 RASSF7Q02833 373 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 KCNMA1Q12791 1236 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 KIAA1211Q6ZU35 1233 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 ACAD11Q709F0 780 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 HS2ST1Q7LGA3 356 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 ALYREFQ86V81 257 aaKnown RBP6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 RELL1Q8IUW5 271 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 KCNB2Q92953 911 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 DCAF5Q96JK2 942 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 RSRP1Q9BUV0 290 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 EMILIN2Q9BXX0 1053 aa6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 METTL5Q9NRN9 209 aaKnown RBP6.72□□□□□ -1.33
TOPBP1-204ENST00000505804 MINDY4BA8MYZ0 360 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 C9orf172C9J069 976 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 RLBP1P12271 317 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 GBP2P32456 591 aaPredicted RBP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 GSK3AP49840 483 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 ZNF252P-AS1Q0IIN9 211 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 EXOSC6Q5RKV6 272 aaKnown RBP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 MAP1SQ66K74 1059 aaPredicted RBP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 ERMP1Q7Z2K6 904 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 METTL16Q86W50 562 aaKnown RBP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 AGGF1Q8N302 714 aaeCLIP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 NACC1Q96RE7 527 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 RUSC1Q9BVN2 902 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 CCDC86Q9H6F5 360 aaKnown RBP6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 KBTBD4Q9NVX7 518 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 CYP8B1Q9UNU6 501 aa6.71□□□□□ -1.34
TOPBP1-204ENST00000505804 F8W735 103 aaPredicted RBP6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 TCF3P15923 654 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 LIG1P18858 919 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 PDE3AQ14432 1141 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 LRRC14Q15048 493 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 LLGL2Q6P1M3 1020 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 AGMOQ6ZNB7 445 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 TMEM130Q8N3G9 435 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 PHC3Q8NDX5 983 aa6.7□□□□□ -1.34
TOPBP1-204ENST00000505804 PCDHB5Q9Y5E4 795 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms