RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 DENND2AQ9ULE3 1009 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 KIF20AO95235 890 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ST5P78524 1137 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ARHGEF28Q8N1W1 1705 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ERBB3P21860 1342 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 ADCY9O60503 1353 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 B4E1Z4 1266 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 JAK2O60674 1132 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 A0A1B0GVL5 298 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 MCM3P25205 808 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 CALML3P27482 149 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 SPAG1Q07617 926 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 CCDC96Q2M329 555 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 PPP4R3BQ5MIZ7 849 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 FAM173BQ6P4H8 233 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 PI4K2BQ8TCG2 481 aa12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 EDC3Q96F86 508 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-205ENST00000503057 PFKFB2O60825 505 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 CIAO1O76071 339 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 LRRC27Q9C0I9 530 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 RXRAP19793 462 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 ZAP70P43403 619 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 CBX1P83916 185 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 ITSN1Q15811 1721 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 ZNF804AQ7Z570 1209 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 DNAJC10Q8IXB1 793 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 RASEFQ8IZ41 740 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 CBX8Q9HC52 389 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 TMOD2Q9NZR1 351 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 DEXIO95424 95 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 TERF1P54274 439 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 RILPL1Q5EBL4 403 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 OVOS2A0A0J9YW53 1432 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 CRB1P82279 1406 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 OVOS2Q6IE36 1432 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 AFMP43652 599 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 GAS2L3Q86XJ1 694 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 STAT6P42226 847 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 RRAGBQ5VZM2 374 aa12.31□□□□□ -0.44
LIMCH1-205ENST00000503057 TPTE2Q6XPS3 522 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 TMEM94Q12767 1356 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 PRKCSHP14314 528 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 LMOD1P29536 600 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 TAF5LO75529 589 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 PCCAP05165 728 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 ZNF75DP51815 510 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 CTSWP56202 376 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 AXDND1Q5T1B0 1012 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 KLHL34Q8N239 644 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 IFNKQ9P0W0 207 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 CPS1P31327 1500 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 N4BP3O15049 544 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 MTIF2P46199 727 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 TTLL7Q6ZT98 887 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 ZBTB38Q8NAP3 1195 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 SPATA5Q8NB90 893 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 DHX58Q96C10 678 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 ARMT1Q9H993 441 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 SLAIN2Q9P270 581 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 DBNLQ9UJU6 430 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 PTPRUQ92729 1446 aa12.3□□□□□ -0.44
LIMCH1-205ENST00000503057 PPP1R12BO60237 982 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 USO1O60763 962 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 MYL5Q02045 173 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 MAP9Q49MG5 647 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 CACNA2D4Q7Z3S7 1137 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 CCDC87Q9NVE4 849 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 MYOM1P52179 1685 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 TMEM131LA2VDJ0 1609 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 ADCK5Q3MIX3 580 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 TLR7Q9NYK1 1049 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 STX8Q9UNK0 236 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 ERLIN2O94905 339 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 HSPD1P10809 573 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 GNG11P61952 73 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 EXOC1Q9NV70 894 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 ZNF532Q9HCE3 1301 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 PRAMEF22A3QJZ6 481 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 HLA-DOAP06340 250 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 PPP2R5BQ15173 497 aa12.29□□□□□ -0.44
LIMCH1-205ENST00000503057 CUTAO60888 179 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 MTX1Q13505 466 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 SRRTQ9BXP5 876 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 MROH1Q8NDA8 1641 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 SLC4A8Q2Y0W8 1093 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 ODF2Q5BJF6 829 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 JAKMIP3Q5VZ66 844 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 HEATR3Q7Z4Q2 680 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 TAF4BQ92750 862 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 CUL5Q93034 780 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 TRIM47Q96LD4 638 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 PXDNLA1KZ92 1463 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 GOLGA6L10A6NI86 522 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 EHBP1Q8NDI1 1231 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 SEC62Q99442 399 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 ATG3Q9NT62 314 aa12.28□□□□□ -0.44
LIMCH1-205ENST00000503057 GTPBP4Q9BZE4 634 aaKnown RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms