RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CCDC85AQ96PX6 553 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 CDX2Q99626 313 aaPredicted RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 TET3O43151 1660 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 NPC1L1Q9UHC9 1359 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 CLRN2A0PK11 232 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 GOLGA6L10A6NI86 522 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 LRCH2Q5VUJ6 765 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 ATXN2LQ8WWM7 1075 aaKnown RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 PBXIP1Q96AQ6 731 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 CPSF2Q9P2I0 782 aaKnown RBP6.04□□□□□ -1.44
USP54-216ENST00000498143 ZNF536O15090 1300 aa6.04□□□□□ -1.44
USP54-216ENST00000498143 BTBD11A6QL63 1104 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 DHX16O60231 1041 aaKnown RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 MAGEA10P43363 369 aaPredicted RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 PRR5LQ6MZQ0 368 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 RASSF8Q8NHQ8 419 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 DNAI2Q9GZS0 605 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 SHPRHQ149N8 1683 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 PPP2R2DQ66LE6 453 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 ANKRD18AQ8IVF6 992 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 GAS2L2Q8NHY3 880 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 DYDC1Q8WWB3 177 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 SLC4A9Q96Q91 983 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 METTL14Q9HCE5 456 aaKnown RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 FAM86C2PA6NEL3 165 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 KIF4AO95239 1232 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 PPP4R3BQ5MIZ7 849 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 SULT6B1Q6IMI4 303 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 RUFY4Q6ZNE9 571 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 TIGD1Q96MW7 591 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 ANAPC4Q9UJX5 808 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 ZBTB1Q9Y2K1 713 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 ATP5J2-PTCD1G3V325 749 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 GTF2IP78347 998 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 IKQ13123 557 aaPredicted RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 RINLQ6ZS11 566 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 NKD2Q969F2 451 aaPredicted RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 ZNF830Q96NB3 372 aaPredicted RBP6.03□□□□□ -1.44
USP54-216ENST00000498143 MKNK1Q9BUB5 465 aa6.03□□□□□ -1.44
USP54-216ENST00000498143 DDX58O95786 925 aaKnown RBP6.02□□□□□ -1.45
USP54-216ENST00000498143 SRGAP2BP0DMP2 458 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 PARP10Q53GL7 1025 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 FASTKD5Q7L8L6 764 aaKnown RBP6.02□□□□□ -1.45
USP54-216ENST00000498143 KCNV2Q8TDN2 545 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 STK10O94804 968 aaKnown RBP6.02□□□□□ -1.45
USP54-216ENST00000498143 PDE4AP27815 886 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 HOXC9P31274 260 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 GIMAP7Q8NHV1 300 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 PRDM12Q9H4Q4 367 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 ARHGEF5Q12774 1597 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 RGPD1P0DJD0 1748 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 USP17L3A6NCW0 530 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 USP17L4A6NCW7 530 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 CASQ1P31415 396 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 MKRN4PQ13434 485 aaPredicted RBP6.02□□□□□ -1.45
USP54-216ENST00000498143 USP17L1Q7RTZ2 530 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 TAX1BP1Q86VP1 789 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 AMOTL1Q8IY63 956 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 TMEM199Q8N511 208 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 DPF2Q92785 391 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 NUDT12Q9BQG2 462 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 CDV3Q9UKY7 258 aaKnown RBP6.02□□□□□ -1.45
USP54-216ENST00000498143 CTTNBP2Q8WZ74 1663 aa6.02□□□□□ -1.45
USP54-216ENST00000498143 CPDO75976 1380 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 SASH1O94885 1247 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 SGPL1O95470 568 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 PKN1Q16512 942 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 JARID2Q92833 1246 aaPredicted RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 ADGBQ8N7X0 1667 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 POLRMTO00411 1230 aaKnown RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 MAP2K5Q13163 448 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 PTPROQ16827 1216 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CLUAP1Q96AJ1 413 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CNPY2Q9Y2B0 182 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 ASXL3Q9C0F0 2248 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 ROCK2O75116 1388 aaKnown RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 DDR1Q08345 913 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CRHR2Q13324 411 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 ITPK1Q13572 414 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 GBP4Q96PP9 640 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 POP1Q99575 1024 aaKnown RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 TCP10L2B9ZVM9 353 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 PQBP1O60828 265 aaKnown RBP6.01□□□□□ -1.45
USP54-216ENST00000498143 ZNF853P0CG23 659 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 SPRYD7Q5W111 196 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CCDC91Q7Z6B0 441 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 IFNL1Q8IU54 200 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CNNM1Q9NRU3 951 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 ATG3Q9NT62 314 aa6.01□□□□□ -1.45
USP54-216ENST00000498143 CNTNAP4Q9C0A0 1308 aa6□□□□□ -1.45
USP54-216ENST00000498143 PSMD14O00487 310 aa6□□□□□ -1.45
USP54-216ENST00000498143 ECE2O60344 883 aa6□□□□□ -1.45
USP54-216ENST00000498143 IPO7O95373 1038 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 INHAP05111 366 aa6□□□□□ -1.45
USP54-216ENST00000498143 ERCC3P19447 782 aa6□□□□□ -1.45
USP54-216ENST00000498143 ZC3H14Q6PJT7 736 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 RASAL3Q86YV0 1011 aa6□□□□□ -1.45
USP54-216ENST00000498143 GJD3Q8N144 294 aa6□□□□□ -1.45
USP54-216ENST00000498143 TMTC2Q8N394 836 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms