RNA–Protein interactions for RNA: ENST00000496393.2

NVL-223, Transcript of nuclear VCP-like, human

TSL 3

Gene NVL, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-223	ENST00000496393	MYC	P01106	439 aa	Predicted RBP	10.07	□□□□□ -0.8
NVL-223	ENST00000496393	ITGA6	P23229	1130 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	GJA5	P36382	358 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	GNAI1	P63096	354 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	CCDC30	Q5VVM6	783 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	CERS5	Q8N5B7	392 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	TSPYL6	Q8N831	410 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	ERO1A	Q96HE7	468 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	PTPN22	Q9Y2R2	807 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	LEMD3	Q9Y2U8	911 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	ECM29	Q5VYK3	1845 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	PPP1R12B	O60237	982 aa	Predicted RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	ZBTB48	P10074	688 aa	Predicted RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	CHRND	Q07001	517 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	NEXN	Q0ZGT2	675 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	DDX10	Q13206	875 aa	Known RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	CFAP100	Q494V2	611 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	INTS3	Q68E01	1043 aa	Known RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	KSR2	Q6VAB6	950 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	G2E3	Q7L622	706 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	HELB	Q8NG08	1087 aa	Predicted RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	TSR2	Q969E8	191 aa	Known RBP	10.06	□□□□□ -0.8
NVL-223	ENST00000496393	HS3ST6	Q96QI5	342 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	MPHOSPH8	Q99549	860 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	EFCC1	Q9HA90	598 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	CD209	Q9NNX6	404 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393		A0A1B0GUL6	1792 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	LAMB1	P07942	1786 aa		10.06	□□□□□ -0.8
NVL-223	ENST00000496393	CENPF	P49454	3210 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	TAF5L	O75529	589 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	FXR1	P51114	621 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
NVL-223	ENST00000496393	INHBE	P58166	350 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	ARMC5	Q96C12	935 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	PTPN18	Q99952	460 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	KRTAP3-3	Q9BYR6	98 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	KRTAP3-2	Q9BYR7	98 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	ANKRD2	Q9GZV1	360 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	ELP3	Q9H9T3	547 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	BRCA2	P51587	3418 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	ZSWIM8	A7E2V4	1837 aa		10.05	□□□□□ -0.8
NVL-223	ENST00000496393	ECM2	O94769	699 aa	Predicted RBP	10.04	□□□□□ -0.8
NVL-223	ENST00000496393	IREB2	P48200	963 aa	Known RBP	10.04	□□□□□ -0.8
NVL-223	ENST00000496393	RBM5	P52756	815 aa	Known RBP eCLIP	10.04	□□□□□ -0.8
NVL-223	ENST00000496393	SP3	Q02447	781 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	CALD1	Q05682	793 aa	Known RBP	10.04	□□□□□ -0.8
NVL-223	ENST00000496393	RASA3	Q14644	834 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	MAP3K11	Q16584	847 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	OPTN	Q96CV9	577 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	PRMT6	Q96LA8	375 aa	Predicted RBP	10.04	□□□□□ -0.8
NVL-223	ENST00000496393	STK31	Q9BXU1	1019 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	BOLA1	Q9Y3E2	137 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	CHMP3	Q9Y3E7	222 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393	PTCH2	Q9Y6C5	1203 aa		10.04	□□□□□ -0.8
NVL-223	ENST00000496393		H7C1W4	665 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	CEP290	O15078	2479 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	MYO1B	O43795	1136 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	USP2	O75604	605 aa	Predicted RBP	10.03	□□□□□ -0.8
NVL-223	ENST00000496393	GCKR	Q14397	625 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	SUPT20HL1	Q3ZLR7	823 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	OTUD7B	Q6GQQ9	843 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	PPP2R3B	Q9Y5P8	575 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	TRIOBP	Q9H2D6	2365 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	IRS2	Q9Y4H2	1338 aa		10.03	□□□□□ -0.8
NVL-223	ENST00000496393	ANKRD18B	A2A2Z9	1011 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	PLIN1	O60240	522 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	HOXB3	P14651	431 aa	Predicted RBP	10.02	□□□□□ -0.81
NVL-223	ENST00000496393	MMP14	P50281	582 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	CASP7	P55210	303 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	SLC4A8	Q2Y0W8	1093 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	SLC9C1	Q4G0N8	1177 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	ZNF804A	Q7Z570	1209 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	ANKRD13A	Q8IZ07	590 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	MTMR14	Q8NCE2	650 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	BRI3BP	Q8WY22	251 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	ZNF333	Q96JL9	665 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	PLA2G12B	Q9BX93	195 aa		10.02	□□□□□ -0.81
NVL-223	ENST00000496393	CCL15-CCL14	A0A0B4J2E2	113 aa		10.01	□□□□□ -0.81
NVL-223	ENST00000496393		H0YGN5	161 aa		10.01	□□□□□ -0.81
NVL-223	ENST00000496393	TAF1C	Q15572	869 aa	Predicted RBP	10.01	□□□□□ -0.81
NVL-223	ENST00000496393	CCL15	Q16663	113 aa		10.01	□□□□□ -0.81
NVL-223	ENST00000496393	SH3TC2	Q8TF17	1288 aa		10.01	□□□□□ -0.81
NVL-223	ENST00000496393	ZNF594	Q96JF6	807 aa	Predicted RBP	10.01	□□□□□ -0.81
NVL-223	ENST00000496393	TESPA1	A2RU30	521 aa	Predicted RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	TCP10L2	B9ZVM9	353 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	CSF1R	P07333	972 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	IL1R1	P14778	569 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	FLII	Q13045	1269 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	FKBP5	Q13451	457 aa	Predicted RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	VGLL4	Q14135	290 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	TWISTNB	Q3B726	338 aa	Predicted RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	FAM43A	Q8N2R8	423 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	MS4A4A	Q96JQ5	239 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	ARHGAP39	Q9C0H5	1083 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	MYH16	Q9H6N6	1097 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	TDRD3	Q9H7E2	651 aa	Known RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	ZFYVE28	Q9HCC9	887 aa		10	□□□□□ -0.81
NVL-223	ENST00000496393	ZNF70	Q9UC06	446 aa	Predicted RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	TTF2	Q9UNY4	1162 aa	Known RBP	10	□□□□□ -0.81
NVL-223	ENST00000496393	ARAP2	Q8WZ64	1704 aa		9.99	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms