RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 ECM29Q5VYK3 1845 aa8.23□□□□□ -1.09
USP39-219ENST00000496047 EP400Q96L91 3159 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 ATRNO75882 1429 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 GOLGA6L3A6NEY3 463 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 NPHP1O15259 732 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 CAMTA2O94983 1202 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 BAG4O95429 457 aaKnown RBP8.22□□□□□ -1.09
USP39-219ENST00000496047 MBD3O95983 291 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 FKBP4Q02790 459 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP39-219ENST00000496047 PTH1RQ03431 593 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 WASHC4Q2M389 1173 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 TSGA10IPQ3SY00 556 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 RC3H1Q5TC82 1133 aaKnown RBP8.22□□□□□ -1.09
USP39-219ENST00000496047 INTS5Q6P9B9 1019 aaKnown RBP8.22□□□□□ -1.09
USP39-219ENST00000496047 LPIN2Q92539 896 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 ZNF512BQ96KM6 892 aaPredicted RBP8.22□□□□□ -1.09
USP39-219ENST00000496047 TTC14Q96N46 770 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 CCDC85AQ96PX6 553 aaPredicted RBP8.22□□□□□ -1.09
USP39-219ENST00000496047 SLC4A9Q96Q91 983 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 GREM2Q9H772 168 aa8.22□□□□□ -1.09
USP39-219ENST00000496047 CACNA1SQ13698 1873 aa8.21□□□□□ -1.09
USP39-219ENST00000496047 BAZ2AQ9UIF9 1905 aaKnown RBP8.21□□□□□ -1.09
USP39-219ENST00000496047 TIAM2Q8IVF5 1701 aa8.21□□□□□ -1.09
USP39-219ENST00000496047 ZPR1O75312 459 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 PDE8BO95263 885 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 RPS6KB1P23443 525 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 TIMM10P62072 90 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 ZMYM1Q5SVZ6 1142 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 USPL1Q5W0Q7 1092 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 MCTP1Q6DN14 999 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 ZGPATQ8N5A5 531 aaKnown RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 APPBP2Q92624 585 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 ANP32BQ92688 251 aaKnown RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 NEK1Q96PY6 1258 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 PUS3Q9BZE2 481 aaKnown RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 IL25Q9H293 177 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 ALDH8A1Q9H2A2 487 aaPredicted RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 EMILIN3Q9NT22 766 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 GNL3LQ9NVN8 582 aaKnown RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 DDX49Q9Y6V7 483 aaKnown RBP8.21□□□□□ -1.1
USP39-219ENST00000496047 UBN2Q6ZU65 1347 aa8.21□□□□□ -1.1
USP39-219ENST00000496047 RGPD3A6NKT7 1758 aaPredicted RBP8.2□□□□□ -1.1
USP39-219ENST00000496047 RGPD4Q7Z3J3 1758 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 NAV1Q8NEY1 1877 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 TAF5LO75529 589 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 CYP2E1P05181 493 aaPredicted RBP8.2□□□□□ -1.1
USP39-219ENST00000496047 NUDT7P0C024 238 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 ITPK1Q13572 414 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 IMMTQ16891 758 aaKnown RBP8.2□□□□□ -1.1
USP39-219ENST00000496047 KLHL40Q2TBA0 621 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 SUSD4Q5VX71 490 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 ANKRD18AQ8IVF6 992 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 PLA2G2EQ9NZK7 142 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 CCNL1Q9UK58 526 aaPredicted RBP8.2□□□□□ -1.1
USP39-219ENST00000496047 RTCBQ9Y3I0 505 aaKnown RBP8.2□□□□□ -1.1
USP39-219ENST00000496047 RIPOR2Q9Y4F9 1068 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 CEP350Q5VT06 3117 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 DLEC1Q9Y238 1755 aa8.2□□□□□ -1.1
USP39-219ENST00000496047 FAM177BA6PVY3 158 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 PHF14O94880 888 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 NTSR2O95665 410 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 BRD1O95696 1058 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 ARID4AP29374 1257 aaPredicted RBP8.19□□□□□ -1.1
USP39-219ENST00000496047 MAP3K12Q12852 859 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 TRDNQ13061 729 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 RALYLQ86SE5 291 aaKnown RBP8.19□□□□□ -1.1
USP39-219ENST00000496047 ZNF589Q86UQ0 364 aaPredicted RBP8.19□□□□□ -1.1
USP39-219ENST00000496047 CCDC83Q8IWF9 413 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 EDC3Q96F86 508 aaKnown RBP8.19□□□□□ -1.1
USP39-219ENST00000496047 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.19□□□□□ -1.1
USP39-219ENST00000496047 MAST3O60307 1309 aa8.19□□□□□ -1.1
USP39-219ENST00000496047 STX6O43752 255 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 RPS6KA4O75676 772 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 GNAT2P19087 354 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 GJB2P29033 226 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 PBX2P40425 430 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 ZAP70P43403 619 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 ADCK5Q3MIX3 580 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 CAVIN4Q5BKX8 364 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 FAM184AQ8NB25 1140 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 GJD4Q96KN9 370 aaPredicted RBP8.18□□□□□ -1.1
USP39-219ENST00000496047 SETDB2Q96T68 719 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 NARFQ9UHQ1 456 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 CARMIL3Q8ND23 1372 aa8.18□□□□□ -1.1
USP39-219ENST00000496047 TNRC6CQ9HCJ0 1690 aaKnown RBP8.18□□□□□ -1.1
USP39-219ENST00000496047 CDK5RAP2Q96SN8 1893 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 GNPATO15228 680 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 IDH1O75874 414 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 ZSCAN22P10073 491 aaPredicted RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 HSPD1P10809 573 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 HCLS1P14317 486 aaPredicted RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 ADORA1P30542 326 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 BAG6P46379 1132 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 MRE11P49959 708 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 HMGN5P82970 282 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 R3HDM1Q15032 1099 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 UBE3CQ15386 1083 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 CCDC102BQ68D86 513 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 TPTE2Q6XPS3 522 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 CCDC129Q6ZRS4 1044 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms