RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 SUPT20HL1Q3ZLR7 823 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 LRRC24Q50LG9 513 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 IFNL1Q8IU54 200 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 KLHDC4Q8TBB5 520 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 ELP3Q9H9T3 547 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 ZNF70Q9UC06 446 aaPredicted RBP15.94■□□□□ 0.14
SKA1-205ENST00000494518 RIPOR2Q9Y4F9 1068 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 TCP10L2B9ZVM9 353 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 CRKP46108 304 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 SPDYE2Q495Y8 402 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 METTL24Q5JXM2 366 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 FBXO46Q6PJ61 603 aaPredicted RBP15.93■□□□□ 0.14
SKA1-205ENST00000494518 VPS37DQ86XT2 251 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 MRPL50Q8N5N7 158 aaKnown RBP15.93■□□□□ 0.14
SKA1-205ENST00000494518 ANKRD44Q8N8A2 993 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 AK9Q5TCS8 1911 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 ZNF521Q96K83 1311 aa15.93■□□□□ 0.14
SKA1-205ENST00000494518 ZBTB48P10074 688 aaPredicted RBP15.92■□□□□ 0.14
SKA1-205ENST00000494518 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
SKA1-205ENST00000494518 NOM1Q5C9Z4 860 aaKnown RBP15.92■□□□□ 0.14
SKA1-205ENST00000494518 DZIP1LQ8IYY4 767 aaKnown RBP15.92■□□□□ 0.14
SKA1-205ENST00000494518 CFHR5Q9BXR6 569 aa15.92■□□□□ 0.14
SKA1-205ENST00000494518 TRIM17Q9Y577 477 aa15.92■□□□□ 0.14
SKA1-205ENST00000494518 MROH5Q6ZUA9 1318 aa15.92■□□□□ 0.14
SKA1-205ENST00000494518 FRAT2O75474 233 aaPredicted RBP15.91■□□□□ 0.14
SKA1-205ENST00000494518 ALDH1A1P00352 501 aa15.91■□□□□ 0.14
SKA1-205ENST00000494518 CACNB3P54284 484 aa15.91■□□□□ 0.14
SKA1-205ENST00000494518 TMEM39BQ9GZU3 492 aa15.91■□□□□ 0.14
SKA1-205ENST00000494518 SERPINA10Q9UK55 444 aa15.91■□□□□ 0.14
SKA1-205ENST00000494518 UTYO14607 1347 aa15.91■□□□□ 0.14
SKA1-205ENST00000494518 CRHR2Q13324 411 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 TNFAIP1Q13829 316 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 RABL6Q3YEC7 729 aaPredicted RBP15.9■□□□□ 0.14
SKA1-205ENST00000494518 FBXO33Q7Z6M2 555 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 ANKRD13AQ8IZ07 590 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 SSH1Q8WYL5 1049 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 OPTNQ96CV9 577 aa15.9■□□□□ 0.14
SKA1-205ENST00000494518 ATXN8OSP0DMR3 200 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 BCAMP50895 628 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 INHBEP58166 350 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 CD99L2Q8TCZ2 262 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 TEPSINQ96N21 525 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 PTPN18Q99952 460 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 ZSWIM8A7E2V4 1837 aa15.89■□□□□ 0.13
SKA1-205ENST00000494518 CAVIN4Q5BKX8 364 aa15.88■□□□□ 0.13
SKA1-205ENST00000494518 OTOP1Q7RTM1 612 aa15.88■□□□□ 0.13
SKA1-205ENST00000494518 VGLL2Q8N8G2 317 aa15.88■□□□□ 0.13
SKA1-205ENST00000494518 BRCA2P51587 3418 aa15.88■□□□□ 0.13
SKA1-205ENST00000494518 MKI67P46013 3256 aaKnown RBP15.88■□□□□ 0.13
SKA1-205ENST00000494518 PDE8BO95263 885 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 TNNI2P48788 182 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 CAP1Q01518 475 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 VGLL4Q14135 290 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.87■□□□□ 0.13
SKA1-205ENST00000494518 USP44Q9H0E7 712 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 PTPRCP08575 1304 aa15.87■□□□□ 0.13
SKA1-205ENST00000494518 OTUD7BQ6GQQ9 843 aa15.86■□□□□ 0.13
SKA1-205ENST00000494518 TEKT1Q969V4 418 aa15.86■□□□□ 0.13
SKA1-205ENST00000494518 OTUD5Q96G74 571 aa15.86■□□□□ 0.13
SKA1-205ENST00000494518 UNCXA6NJT0 531 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 E9PSI1 815 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 TBC1D22AQ8WUA7 517 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 BRI3BPQ8WY22 251 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 CDCA7LQ96GN5 454 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 ERO1AQ96HE7 468 aa15.85■□□□□ 0.13
SKA1-205ENST00000494518 CCL15-CCL14A0A0B4J2E2 113 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 TESPA1A2RU30 521 aaPredicted RBP15.84■□□□□ 0.13
SKA1-205ENST00000494518 POTEFA5A3E0 1075 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 MAP3K9P80192 1104 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 PUM3Q15397 648 aaKnown RBP15.84■□□□□ 0.13
SKA1-205ENST00000494518 CCL15Q16663 113 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 PRPF38BQ5VTL8 546 aaKnown RBP15.84■□□□□ 0.13
SKA1-205ENST00000494518 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.84■□□□□ 0.13
SKA1-205ENST00000494518 MS4A4AQ96JQ5 239 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 SIL1Q9H173 461 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 CSADQ9Y600 493 aa15.84■□□□□ 0.13
SKA1-205ENST00000494518 RBBP6Q7Z6E9 1792 aaKnown RBP15.84■□□□□ 0.13
SKA1-205ENST00000494518 IFIT1P09914 478 aaKnown RBP15.83■□□□□ 0.12
SKA1-205ENST00000494518 FGFR2P21802 821 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 RFX5P48382 616 aaPredicted RBP15.83■□□□□ 0.12
SKA1-205ENST00000494518 SP3Q02447 781 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 SLFN5Q08AF3 891 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 TAF1CQ15572 869 aaPredicted RBP15.83■□□□□ 0.12
SKA1-205ENST00000494518 FAM43AQ8N2R8 423 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 ZKSCAN4Q969J2 545 aaPredicted RBP15.83■□□□□ 0.12
SKA1-205ENST00000494518 WRNIP1Q96S55 665 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 EFCC1Q9HA90 598 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 SMC4Q9NTJ3 1288 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 TMOD2Q9NZR1 351 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 PTPN22Q9Y2R2 807 aa15.83■□□□□ 0.12
SKA1-205ENST00000494518 MYH2Q9UKX2 1941 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 EYA2O00167 538 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 ECM2O94769 699 aaPredicted RBP15.82■□□□□ 0.12
SKA1-205ENST00000494518 SLC5A1P13866 664 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 HDLBPQ00341 1268 aaKnown RBP15.82■□□□□ 0.12
SKA1-205ENST00000494518 APOBEC3HQ6NTF7 200 aaKnown RBP15.82■□□□□ 0.12
SKA1-205ENST00000494518 ZDHHC15Q96MV8 337 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 SNCAIPQ9Y6H5 919 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 CEP290O15078 2479 aa15.82■□□□□ 0.12
SKA1-205ENST00000494518 GTF2A2P52657 109 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms