RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 R3HDM1Q15032 1099 aaKnown RBP16.59■□□□□ 0.25
SMPD4-219ENST00000491128 DIXDC1Q155Q3 683 aa16.59■□□□□ 0.25
SMPD4-219ENST00000491128 MXD3Q9BW11 206 aa16.59■□□□□ 0.25
SMPD4-219ENST00000491128 SLC4A4Q9Y6R1 1079 aa16.59■□□□□ 0.25
SMPD4-219ENST00000491128 A0A1B0GUL6 1792 aa16.58■□□□□ 0.25
SMPD4-219ENST00000491128 RPAP1Q9BWH6 1393 aaPredicted RBP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 PSDA5PKW4 1024 aaPredicted RBP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 ATP2B4P23634 1241 aa16.58■□□□□ 0.25
SMPD4-219ENST00000491128 NAA16Q6N069 864 aaPredicted RBP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 DPP8Q6V1X1 898 aaPredicted RBP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 MPNDQ8N594 471 aa16.58■□□□□ 0.25
SMPD4-219ENST00000491128 GPHNQ9NQX3 736 aaPredicted RBP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 AATFQ9NY61 560 aaKnown RBP eCLIP16.58■□□□□ 0.25
SMPD4-219ENST00000491128 RPS6KB1P23443 525 aa16.58■□□□□ 0.24
SMPD4-219ENST00000491128 ALDH1B1P30837 517 aa16.58■□□□□ 0.24
SMPD4-219ENST00000491128 ZNF804AQ7Z570 1209 aa16.58■□□□□ 0.24
SMPD4-219ENST00000491128 NSUN4Q96CB9 384 aaKnown RBP16.58■□□□□ 0.24
SMPD4-219ENST00000491128 KCNQ5Q9NR82 932 aa16.58■□□□□ 0.24
SMPD4-219ENST00000491128 TPCN1Q9ULQ1 816 aa16.58■□□□□ 0.24
SMPD4-219ENST00000491128 PPFIA3O75145 1194 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 EVX2Q03828 476 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 NFKBIBQ15653 356 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 KLHL34Q8N239 644 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 TDRD7Q8NHU6 1098 aaKnown RBP16.57■□□□□ 0.24
SMPD4-219ENST00000491128 NBPF3Q9H094 633 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 GSG1L2A8MUP6 293 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 PSMA5P28066 241 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 DDIT3P35638 169 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 CTDSPL2Q05D32 466 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 TM6SF1Q9BZW5 370 aa16.57■□□□□ 0.24
SMPD4-219ENST00000491128 ZNF213O14771 459 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 TOB2Q14106 344 aaPredicted RBP16.56■□□□□ 0.24
SMPD4-219ENST00000491128 ME3Q16798 604 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 Q6ZUG5 572 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 CCDC83Q8IWF9 413 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 IFNL3Q8IZI9 196 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 PODXL2Q9NZ53 605 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 CYP2D7A0A087X1C5 515 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 MAGEB6P1A0A0J9YX57 407 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 F8W031 263 aaPredicted RBP16.56■□□□□ 0.24
SMPD4-219ENST00000491128 IMMTQ16891 758 aaKnown RBP16.56■□□□□ 0.24
SMPD4-219ENST00000491128 TBC1D10CQ8IV04 446 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 CHAMP1Q96JM3 812 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 CHMP5Q9NZZ3 219 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 LIMCH1Q9UPQ0 1083 aa16.56■□□□□ 0.24
SMPD4-219ENST00000491128 C21orf2O43822 256 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 GTF2IP78347 998 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 TSGA10IPQ3SY00 556 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 DBNDD1Q9H9R9 158 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 FGD1P98174 961 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 DZIP1Q86YF9 867 aaKnown RBP16.55■□□□□ 0.24
SMPD4-219ENST00000491128 ZC3H12CQ9C0D7 883 aaKnown RBP16.55■□□□□ 0.24
SMPD4-219ENST00000491128 NAP1L2Q9ULW6 460 aaPredicted RBP16.55■□□□□ 0.24
SMPD4-219ENST00000491128 TACC3Q9Y6A5 838 aa16.55■□□□□ 0.24
SMPD4-219ENST00000491128 PATL2C9JE40 543 aaKnown RBP16.54■□□□□ 0.24
SMPD4-219ENST00000491128 TDO2P48775 406 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 RAB11FIP4Q86YS3 637 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 BRF1Q92994 677 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 RIOK1Q9BRS2 568 aaKnown RBP16.54■□□□□ 0.24
SMPD4-219ENST00000491128 NAPBQ9H115 298 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 COL11A2P13942 1736 aaPredicted RBP16.54■□□□□ 0.24
SMPD4-219ENST00000491128 SEMA3EO15041 775 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 ST3GAL1Q11201 340 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 RGPD3A6NKT7 1758 aaPredicted RBP16.54■□□□□ 0.24
SMPD4-219ENST00000491128 RGPD4Q7Z3J3 1758 aa16.54■□□□□ 0.24
SMPD4-219ENST00000491128 MINDY4BA8MYZ0 360 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 LDHBP07195 334 aaKnown RBP16.53■□□□□ 0.24
SMPD4-219ENST00000491128 MCM2P49736 904 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 MFSD14BQ5SR56 506 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 TMX4Q9H1E5 349 aaPredicted RBP16.53■□□□□ 0.24
SMPD4-219ENST00000491128 CTNNA3Q9UI47 895 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 DPEP1P16444 411 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 KRT32Q14532 448 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 TICAM2Q86XR7 235 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 NRXN2Q9P2S2 1712 aa16.53■□□□□ 0.24
SMPD4-219ENST00000491128 APOBRQ0VD83 1088 aa16.52■□□□□ 0.24
SMPD4-219ENST00000491128 FOXD4L6Q3SYB3 417 aaPredicted RBP16.52■□□□□ 0.24
SMPD4-219ENST00000491128 FOXD4L3Q6VB84 417 aaPredicted RBP16.52■□□□□ 0.24
SMPD4-219ENST00000491128 G3V3G9 751 aa16.52■□□□□ 0.23
SMPD4-219ENST00000491128 RRP12Q5JTH9 1297 aaKnown RBP16.52■□□□□ 0.23
SMPD4-219ENST00000491128 DCAF8Q5TAQ9 597 aa16.52■□□□□ 0.23
SMPD4-219ENST00000491128 TOMM22Q9NS69 142 aa16.52■□□□□ 0.23
SMPD4-219ENST00000491128 IL1R1P14778 569 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 CUL4AQ13619 759 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 DHX32Q7L7V1 743 aaKnown RBP16.51■□□□□ 0.23
SMPD4-219ENST00000491128 WDR66Q8TBY9 1149 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 TNPO1Q92973 898 aaKnown RBP16.51■□□□□ 0.23
SMPD4-219ENST00000491128 NEDD4P46934 1319 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 B4E1Z4 1266 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 STYK1Q6J9G0 422 aa16.51■□□□□ 0.23
SMPD4-219ENST00000491128 UPF1Q92900 1129 aaKnown RBP eCLIP16.51■□□□□ 0.231e-11■■■■■ 41.1
SMPD4-219ENST00000491128 AOC3Q16853 763 aa16.5■□□□□ 0.23
SMPD4-219ENST00000491128 C15orf52Q6ZUT6 534 aaKnown RBP16.5■□□□□ 0.23
SMPD4-219ENST00000491128 MYH7P12883 1935 aa16.5■□□□□ 0.23
SMPD4-219ENST00000491128 ANTXR2P58335 489 aa16.5■□□□□ 0.23
SMPD4-219ENST00000491128 PRDM1O75626 825 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 KCNA3P22001 575 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CCT2P78371 535 aaKnown RBP16.49■□□□□ 0.23
SMPD4-219ENST00000491128 EXOSC10Q01780 885 aaKnown RBP16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CYB5R4Q7L1T6 521 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms