RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 PITPNM2Q9BZ72 1349 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 ITGA6P23229 1130 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 WASHC4Q2M389 1173 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 AACSQ86V21 672 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 GPR108Q9NPR9 543 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 LAMB2P55268 1798 aa14.69□□□□□ -0.06
HLA-DOB-209ENST00000488325 CDC45O75419 566 aa14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 HCLS1P14317 486 aaPredicted RBP14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 SCARF1Q14162 830 aa14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 TTLL12Q14166 644 aaPredicted RBP14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 SLC10A5Q5PT55 438 aa14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 GREM2Q9H772 168 aa14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 UPF2Q9HAU5 1272 aaKnown RBP14.68□□□□□ -0.06
HLA-DOB-209ENST00000488325 RIMBP2O15034 1052 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 ECE2O60344 883 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 GLRX3O76003 335 aaKnown RBP14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 ALDH1A1P00352 501 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 GSPT1P15170 499 aaKnown RBP14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 TFCP2Q12800 502 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 TNNI3KQ59H18 835 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 CASC1Q6TDU7 716 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 ZNF594Q96JF6 807 aaPredicted RBP14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 CCDC85AQ96PX6 553 aaPredicted RBP14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 ECHDC1Q9NTX5 307 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 CEP126Q9P2H0 1117 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 SCAF8Q9UPN6 1271 aaKnown RBP14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 FPGT-TNNI3KV9GXZ4 949 aa14.67□□□□□ -0.06
HLA-DOB-209ENST00000488325 ZNF609O15014 1411 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 GRAPQ13588 217 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 DOK7Q18PE1 504 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 PRAMEF18Q5VWM3 479 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 ATG9AQ7Z3C6 839 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 GRAPLQ8TC17 118 aaPredicted RBP14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 CD99L2Q8TCZ2 262 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 EAF2Q96CJ1 260 aaPredicted RBP14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 ERO1AQ96HE7 468 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 ZNF333Q96JL9 665 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 CDC5LQ99459 802 aaKnown RBP14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 CNNM1Q9NRU3 951 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 AKAP2Q9Y2D5 859 aa14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 DDX60Q8IY21 1712 aaKnown RBP14.66□□□□□ -0.06
HLA-DOB-209ENST00000488325 VIL1P09327 827 aaKnown RBP14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 SDSP20132 328 aa14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 ZNF280AP59817 542 aaPredicted RBP14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 SF3B3Q15393 1217 aaKnown RBP14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 LRRC24Q50LG9 513 aa14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 LDHAL6AQ6ZMR3 332 aa14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 DDX46Q7L014 1031 aaKnown RBP14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 EFCC1Q9HA90 598 aa14.65□□□□□ -0.06
HLA-DOB-209ENST00000488325 LRRC37AA6NMS7 1700 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 TRIM6-TRIM34B2RNG4 842 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 IGHMBP2P38935 993 aaKnown RBP14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 SLC4A8Q2Y0W8 1093 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 PI4K2BQ8TCG2 481 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 MPHOSPH8Q99549 860 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 CCDC8Q9H0W5 538 aaPredicted RBP14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 PRO3102Q9H379 93 aa14.64□□□□□ -0.07
HLA-DOB-209ENST00000488325 C6orf229H3BNL8 230 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 METTL24Q5JXM2 366 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 SPRYD7Q5W111 196 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 TSHZ3Q63HK5 1081 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 TMC4Q7Z404 712 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 IFNL1Q8IU54 200 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 PUS3Q9BZE2 481 aaKnown RBP14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 POLLQ9UGP5 575 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 NSFL1CQ9UNZ2 370 aaKnown RBP14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 RIPOR2Q9Y4F9 1068 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 TAF1P21675 1872 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 MROH5Q6ZUA9 1318 aa14.63□□□□□ -0.07
HLA-DOB-209ENST00000488325 SCN9AQ15858 1988 aa14.62□□□□□ -0.07
HLA-DOB-209ENST00000488325 TBC1D9Q6ZT07 1266 aa14.62□□□□□ -0.07
HLA-DOB-209ENST00000488325 LAMA3Q16787 3333 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 UNC80Q8N2C7 3258 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 MANSC4A6NHS7 340 aaPredicted RBP14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 NF2P35240 595 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 ANP32AP39687 249 aaKnown RBP14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 CAP1Q01518 475 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 ANKRD18AQ8IVF6 992 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 DPF3Q92784 378 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 RILPL2Q969X0 211 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 NEUROD6Q96NK8 337 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 EYA3Q99504 573 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 COL25A1Q9BXS0 654 aaPredicted RBP14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 MYOZ2Q9NPC6 264 aa14.61□□□□□ -0.07
HLA-DOB-209ENST00000488325 A0A1B0GUL7 405 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 IGF2BP3O00425 579 aaKnown RBP eCLIP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 SOX1O00570 391 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 MYCP01106 439 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 ATP5JP18859 108 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 INHBEP58166 350 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 SLC9C1Q4G0N8 1177 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 RSBN1LQ6PCB5 846 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 NBPF11Q86T75 865 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 AGBL3Q8NEM8 1001 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 LRCH3Q96II8 777 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 SEC31BQ9NQW1 1179 aa14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 TLR7Q9NYK1 1049 aaKnown RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 DBNLQ9UJU6 430 aaKnown RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.6□□□□□ -0.07
HLA-DOB-209ENST00000488325 MFAP1P55081 439 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms