RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 ARAP2Q8WZ64 1704 aa15.34■□□□□ 0.05
SDC3-204ENST00000487984 CCDC85CA6NKD9 419 aa15.34■□□□□ 0.05
SDC3-204ENST00000487984 CIAO1O76071 339 aa15.34■□□□□ 0.05
SDC3-204ENST00000487984 CLMNQ96JQ2 1002 aa15.34■□□□□ 0.05
SDC3-204ENST00000487984 FBXO3Q9UK99 471 aa15.34■□□□□ 0.05
SDC3-204ENST00000487984 PA2G4Q9UQ80 394 aaKnown RBP15.34■□□□□ 0.05
SDC3-204ENST00000487984 ECM29Q5VYK3 1845 aa15.33■□□□□ 0.05
SDC3-204ENST00000487984 TCP10L2B9ZVM9 353 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 TBC1D8O95759 1140 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 HDLBPQ00341 1268 aaKnown RBP15.33■□□□□ 0.04
SDC3-204ENST00000487984 SREBF2Q12772 1141 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 INTS3Q68E01 1043 aaKnown RBP15.33■□□□□ 0.04
SDC3-204ENST00000487984 CDAN1Q8IWY9 1227 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 TEKT1Q969V4 418 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 SLC10A4Q96EP9 437 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.33■□□□□ 0.04
SDC3-204ENST00000487984 HDAC5Q9UQL6 1122 aa15.33■□□□□ 0.04
SDC3-204ENST00000487984 UNCXA6NJT0 531 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 USP2O75604 605 aaPredicted RBP15.32■□□□□ 0.04
SDC3-204ENST00000487984 TRIM27P14373 513 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 IREB2P48200 963 aaKnown RBP15.32■□□□□ 0.04
SDC3-204ENST00000487984 ATP2B3Q16720 1220 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 MIER1Q8N108 512 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 TEPSINQ96N21 525 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 TMEM39BQ9GZU3 492 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 CEP126Q9P2H0 1117 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 SUGT1Q9Y2Z0 365 aa15.32■□□□□ 0.04
SDC3-204ENST00000487984 AKAP11Q9UKA4 1901 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 BCAR3O75815 825 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 GNAI3P08754 354 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 ZBTB48P10074 688 aaPredicted RBP15.31■□□□□ 0.04
SDC3-204ENST00000487984 IL15P40933 162 aaPredicted RBP15.31■□□□□ 0.04
SDC3-204ENST00000487984 CACNB3P54284 484 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 WNK4Q96J92 1243 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 ZDHHC15Q96MV8 337 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 MRIQ9BWK5 157 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 COPRSQ9NQ92 184 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 TNNQ9UQP3 1299 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 MAST3O60307 1309 aa15.31■□□□□ 0.04
SDC3-204ENST00000487984 MANSC4A6NHS7 340 aaPredicted RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 IPO8O15397 1037 aaKnown RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 TNNI2P48788 182 aa15.3■□□□□ 0.04
SDC3-204ENST00000487984 APOBEC3HQ6NTF7 200 aaKnown RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 ATF7IPQ6VMQ6 1270 aa15.3■□□□□ 0.04
SDC3-204ENST00000487984 CTU1Q7Z7A3 348 aaKnown RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 WDR66Q8TBY9 1149 aa15.3■□□□□ 0.04
SDC3-204ENST00000487984 ZNF296Q8WUU4 475 aaPredicted RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 FRAT1Q92837 279 aaPredicted RBP15.3■□□□□ 0.04
SDC3-204ENST00000487984 GJA5P36382 358 aa15.29■□□□□ 0.04
SDC3-204ENST00000487984 HHIPL2Q6UWX4 724 aa15.29■□□□□ 0.04
SDC3-204ENST00000487984 ANKRD13AQ8IZ07 590 aa15.29■□□□□ 0.04
SDC3-204ENST00000487984 CFHR5Q9BXR6 569 aa15.29■□□□□ 0.04
SDC3-204ENST00000487984 R3HDMLQ9H3Y0 253 aa15.29■□□□□ 0.04
SDC3-204ENST00000487984 GPR25O00155 361 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 SRGAP3O43295 1099 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 ADORA1P30542 326 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 PHKA1P46020 1223 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 HNRNPUQ00839 825 aaKnown RBP eCLIP15.28■□□□□ 0.04
SDC3-204ENST00000487984 MTX1Q13505 466 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 NOM1Q5C9Z4 860 aaKnown RBP15.28■□□□□ 0.04
SDC3-204ENST00000487984 IFNL1Q8IU54 200 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 GNL3LQ9NVN8 582 aaKnown RBP15.28■□□□□ 0.04
SDC3-204ENST00000487984 TMOD2Q9NZR1 351 aa15.28■□□□□ 0.04
SDC3-204ENST00000487984 IGF2BP3O00425 579 aaKnown RBP eCLIP15.27■□□□□ 0.04
SDC3-204ENST00000487984 ALDH1A1P00352 501 aa15.27■□□□□ 0.04
SDC3-204ENST00000487984 PRDX5P30044 214 aa15.27■□□□□ 0.04
SDC3-204ENST00000487984 INHBEP58166 350 aa15.27■□□□□ 0.04
SDC3-204ENST00000487984 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.27■□□□□ 0.04
SDC3-204ENST00000487984 CLUAP1Q96AJ1 413 aa15.27■□□□□ 0.04
SDC3-204ENST00000487984 ELP3Q9H9T3 547 aa15.27■□□□□ 0.04
SDC3-204ENST00000487984 SEMA3EO15041 775 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 VGLL4Q14135 290 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 DIXDC1Q155Q3 683 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 FKBP1CQ5VVH2 108 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 CCDC102BQ68D86 513 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 FAM83AQ86UY5 434 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.26■□□□□ 0.03
SDC3-204ENST00000487984 OPTNQ96CV9 577 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 DENND2AQ9ULE3 1009 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 DAGLAQ9Y4D2 1042 aa15.26■□□□□ 0.03
SDC3-204ENST00000487984 SALL1Q9NSC2 1324 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 GNAI2P04899 355 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 LDHBP07195 334 aaKnown RBP15.25■□□□□ 0.03
SDC3-204ENST00000487984 RGS19P49795 217 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 TIMM10P62072 90 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 MAP3K9P80192 1104 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 TFCP2Q12800 502 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 CNKSR2Q8WXI2 1034 aa15.25■□□□□ 0.03
SDC3-204ENST00000487984 OTOFQ9HC10 1997 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 ZBTB22O15209 634 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 FKTNO75072 461 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 RASGRF1Q13972 1273 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 ZKSCAN2Q63HK3 967 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 TMEM57Q8N5G2 664 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 PTPN18Q99952 460 aa15.24■□□□□ 0.03
SDC3-204ENST00000487984 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.24■□□□□ 0.03
SDC3-204ENST00000487984 RPAP1Q9BWH6 1393 aaPredicted RBP15.24■□□□□ 0.03
SDC3-204ENST00000487984 PNMA6EA0A0J9YXQ4 647 aa15.23■□□□□ 0.03
SDC3-204ENST00000487984 A0A1B0GUL7 405 aa15.23■□□□□ 0.03
SDC3-204ENST00000487984 TESPA1A2RU30 521 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms