RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PDS5AQ29RF7 1337 aaKnown RBP16.99■□□□□ 0.31
CUX1-209ENST00000487284 ZNF646O15015 1829 aaPredicted RBP16.99■□□□□ 0.31
CUX1-209ENST00000487284 MAST2Q6P0Q8 1798 aa16.99■□□□□ 0.31
CUX1-209ENST00000487284 ECE2O60344 883 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 IARSP41252 1262 aaKnown RBP16.98■□□□□ 0.31
CUX1-209ENST00000487284 CREB3L3Q68CJ9 461 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 CCDC129Q6ZRS4 1044 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 LARGE2Q8N3Y3 721 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 TM6SF1Q9BZW5 370 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 DDIT3P35638 169 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 PODNQ7Z5L7 613 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 ANP32EQ9BTT0 268 aa16.98■□□□□ 0.31
CUX1-209ENST00000487284 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.98■□□□□ 0.31
CUX1-209ENST00000487284 PSME4Q14997 1843 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 RPAP1Q9BWH6 1393 aaPredicted RBP16.97■□□□□ 0.31
CUX1-209ENST00000487284 SLC27A2O14975 620 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 ZKSCAN1P17029 563 aaPredicted RBP16.97■□□□□ 0.31
CUX1-209ENST00000487284 PRELPP51888 382 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 SLFNL1Q499Z3 407 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 RNF20Q5VTR2 975 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 ZSCAN25Q6NSZ9 544 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 ARHGAP27Q6ZUM4 889 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 SPRYD3Q8NCJ5 442 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 APPBP2Q92624 585 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 DSCC1Q9BVC3 393 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 UPF3BQ9BZI7 483 aaKnown RBP16.97■□□□□ 0.31
CUX1-209ENST00000487284 VPS33BQ9H267 617 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 KCNQ5Q9NR82 932 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 ABCF2Q9UG63 623 aa16.97■□□□□ 0.31
CUX1-209ENST00000487284 U3KPZ7 1027 aaPredicted RBP16.97■□□□□ 0.31
CUX1-209ENST00000487284 SBF1O95248 1867 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 IDH1O75874 414 aaKnown RBP16.96■□□□□ 0.31
CUX1-209ENST00000487284 ADD2P35612 726 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 GTF2IP78347 998 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 TSGA10IPQ3SY00 556 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 OSBP2Q969R2 916 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 FAM205AQ6ZU69 1335 aa16.96■□□□□ 0.31
CUX1-209ENST00000487284 YDJCA8MPS7 323 aa16.95■□□□□ 0.3
CUX1-209ENST00000487284 M0R2C6 588 aa16.95■□□□□ 0.3
CUX1-209ENST00000487284 WDR66Q8TBY9 1149 aa16.95■□□□□ 0.3
CUX1-209ENST00000487284 FBXW7Q969H0 707 aa16.95■□□□□ 0.3
CUX1-209ENST00000487284 TTC14Q96N46 770 aa16.95■□□□□ 0.3
CUX1-209ENST00000487284 UBE3CQ15386 1083 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 ZSWIM6Q9HCJ5 1215 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 CHMP5Q9NZZ3 219 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 LRP2BPQ9P2M1 347 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 DICER1Q9UPY3 1922 aaKnown RBP16.94■□□□□ 0.3
CUX1-209ENST00000487284 SALL1Q9NSC2 1324 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 HSP90AA1P07900 732 aaKnown RBP16.94■□□□□ 0.3
CUX1-209ENST00000487284 PRDX5P30044 214 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 GRIK5Q16478 980 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 ADCK5Q3MIX3 580 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 TTLL5Q6EMB2 1281 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 NIM1KQ8IY84 436 aa16.94■□□□□ 0.3
CUX1-209ENST00000487284 CIZ1Q9ULV3 898 aaPredicted RBP16.94■□□□□ 0.3
CUX1-209ENST00000487284 CASTP20810 708 aaKnown RBP16.93■□□□□ 0.3
CUX1-209ENST00000487284 MAP3K12Q12852 859 aa16.93■□□□□ 0.3
CUX1-209ENST00000487284 GPR162Q16538 588 aa16.93■□□□□ 0.3
CUX1-209ENST00000487284 MFSD14BQ5SR56 506 aa16.93■□□□□ 0.3
CUX1-209ENST00000487284 ZGPATQ8N5A5 531 aaKnown RBP16.93■□□□□ 0.3
CUX1-209ENST00000487284 JAKMIP1Q96N16 626 aaKnown RBP16.93■□□□□ 0.3
CUX1-209ENST00000487284 MXD3Q9BW11 206 aa16.93■□□□□ 0.3
CUX1-209ENST00000487284 RAI14Q9P0K7 980 aa16.93■□□□□ 0.3
CUX1-209ENST00000487284 TCRBV5S4A2TA0A5A2 114 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 HSPD1P10809 573 aaKnown RBP16.92■□□□□ 0.3
CUX1-209ENST00000487284 PDE6AP16499 860 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 SLC9C2Q5TAH2 1124 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 VPS53Q5VIR6 699 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 CERS5Q8N5B7 392 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 TBC1D22AQ8WUA7 517 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 JDP2Q8WYK2 163 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 TMX3Q96JJ7 454 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 ZNRF3Q9ULT6 936 aa16.92■□□□□ 0.3
CUX1-209ENST00000487284 USP17L3A6NCW0 530 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 USP17L4A6NCW7 530 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 PSMA5P28066 241 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 CUL4AQ13619 759 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 KRT32Q14532 448 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 DACT2Q5SW24 774 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 STRIP1Q5VSL9 837 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 RUFY3Q7L099 469 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 USP17L1Q7RTZ2 530 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 MAGEB6Q8N7X4 407 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 ZNF384Q8TF68 577 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 PUS7LQ9H0K6 701 aaKnown RBP16.91■□□□□ 0.3
CUX1-209ENST00000487284 CYP46A1Q9Y6A2 500 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 TAF6LQ9Y6J9 622 aa16.91■□□□□ 0.3
CUX1-209ENST00000487284 ZNF532Q9HCE3 1301 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 FOXP2O15409 715 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 RAD17O75943 681 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 LDHBP07195 334 aaKnown RBP16.9■□□□□ 0.3
CUX1-209ENST00000487284 LMNB1P20700 586 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 SPTY2D1Q68D10 685 aaPredicted RBP16.9■□□□□ 0.3
CUX1-209ENST00000487284 TIAM2Q8IVF5 1701 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 MYH2Q9UKX2 1941 aa16.9■□□□□ 0.3
CUX1-209ENST00000487284 GPAA1O43292 621 aa16.89■□□□□ 0.3
CUX1-209ENST00000487284 CYP21A2P08686 494 aa16.89■□□□□ 0.3
CUX1-209ENST00000487284 MECOMQ03112 1051 aa16.89■□□□□ 0.3
CUX1-209ENST00000487284 NSUN4Q96CB9 384 aaKnown RBP16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms