RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NCOA5Q9HCD5 579 aaKnown RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 AATKQ6ZMQ8 1374 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 A0A1W2PQ27 194 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 A0A1W2PQ64 194 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 A0A1W2PQD8 194 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 PI4KAP2A4QPH2 592 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 CUTAO60888 179 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 HMGB1P09429 215 aaKnown RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 MARCKSP29966 332 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 PIP4K2BP78356 416 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 TOGARAM2Q6ZUX3 1019 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 SUGP1Q8IWZ8 645 aaKnown RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 PI4KAP1Q8N8J0 262 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 ENGASEQ8NFI3 743 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 DPF2Q92785 391 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 KCNB2Q92953 911 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 RAI14Q9P0K7 980 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 DACH1Q9UI36 760 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 AKAP2Q9Y2D5 859 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC196A0A1B0GTZ2 297 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 STX10O60499 249 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 HSP90AB3PQ58FF7 597 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 NSUN7Q8NE18 718 aaKnown RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 LTV1Q96GA3 475 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-209ENST00000487188 CEP89Q96ST8 783 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 SUGCTQ9HAC7 445 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 SLC52A1Q9NWF4 448 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 SUFUQ9UMX1 484 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 TNRQ92752 1358 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 GNAT3A8MTJ3 354 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 NF2P35240 595 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 BEND6Q5SZJ8 279 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 OTUD7BQ6GQQ9 843 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 EP400NLQ6ZTU2 488 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 FANCLQ9NW38 375 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 MAP2K7O14733 419 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 KIF1CO43896 1103 aaKnown RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 PFKFB1P16118 471 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 CDR1P51861 262 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 TUBB2AQ13885 445 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 FILIP1LQ4L180 1135 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 SPECC1LQ69YQ0 1117 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 SEC62Q99442 399 aaKnown RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 NAPGQ99747 312 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 TUBB2BQ9BVA1 445 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 TAF6LQ9Y6J9 622 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 AKR1B15C9JRZ8 316 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 WASLO00401 505 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 PFKFB2O60825 505 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 RPS6KA5O75582 802 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 ZNF589Q86UQ0 364 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-209ENST00000487188 RTEL1Q9NZ71 1219 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC61Q9Y6R9 512 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 CAPN7Q9Y6W3 813 aa7.12□□□□□ -1.27
VPS13D-209ENST00000487188 ARHGAP23Q9P227 1491 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 YEATS4O95619 227 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 ANXA1P04083 346 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 MMP14P50281 582 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 VSNL1P62760 191 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 STIM1Q13586 685 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC129Q6ZRS4 1044 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 OTUD6BQ8N6M0 293 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 HNRNPLLQ8WVV9 542 aaKnown RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 CLIC4Q9Y696 253 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 SLIT1O75093 1534 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 ADCY9O60503 1353 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 GOLGA6CA6NDK9 693 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 PRR29P0C7W0 189 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 GOLGA6DP0CG33 693 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 PSEN1P49768 467 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 RNF187Q5TA31 235 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 DHX32Q7L7V1 743 aaKnown RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 RPAINQ86UA6 219 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 GDAP1L1Q96MZ0 367 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 PNKPQ96T60 521 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 ALDH8A1Q9H2A2 487 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 GOLGA6AQ9NYA3 693 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 DONSONQ9NYP3 566 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 FAM169AQ9Y6X4 670 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 CRB1P82279 1406 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 USP42Q9H9J4 1324 aaKnown RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 PNOCQ13519 176 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 COL9A3Q14050 684 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 TRIM29Q14134 588 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 FBXW10Q5XX13 1052 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC102BQ68D86 513 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 IRX2Q9BZI1 471 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-209ENST00000487188 MYO5BQ9ULV0 1848 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 MAP3K19Q56UN5 1328 aa7.11□□□□□ -1.27
VPS13D-209ENST00000487188 MYO1BO43795 1136 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 PPP2R5AQ15172 486 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 WHAMMP3Q1A5X7 153 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 ANO1Q5XXA6 986 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 LINC00301Q8NCQ3 95 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 BCAS4Q8TDM0 211 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 JPH2Q9BR39 696 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 NCKAP5LQ9HCH0 1330 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 TAF5LO75529 589 aa7.1□□□□□ -1.27
VPS13D-209ENST00000487188 SWT1Q5T5J6 900 aaKnown RBP7.1□□□□□ -1.27
VPS13D-209ENST00000487188 MICALCLQ6ZW33 695 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms