RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 OS9Q13438 667 aaPredicted RBP19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 SPDYE2Q495Y8 402 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 RGMBQ6NW40 437 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 TEKT1Q969V4 418 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 MRIQ9BWK5 157 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 DEFB129Q9H1M3 183 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 NOP58Q9Y2X3 529 aaKnown RBP19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 PPP2R3BQ9Y5P8 575 aa19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 NEUROD6Q96NK8 337 aa19.37■□□□□ 0.69
CCDC28B-205ENST00000483009 WBP1LQ9NX94 342 aa19.37■□□□□ 0.69
CCDC28B-205ENST00000483009 ZNF70Q9UC06 446 aaPredicted RBP19.37■□□□□ 0.69
CCDC28B-205ENST00000483009 SALL1Q9NSC2 1324 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 AOC2O75106 756 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 MAP2K2P36507 400 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 MAP2K1Q02750 393 aaPredicted RBP19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 RASGRF1Q13972 1273 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 PDE3AQ14432 1141 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 CHMP4BQ9H444 224 aaKnown RBP19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 TDRD3Q9H7E2 651 aaKnown RBP19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 GPR108Q9NPR9 543 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 ARAP2Q8WZ64 1704 aa19.36■□□□□ 0.69
CCDC28B-205ENST00000483009 PDS5AQ29RF7 1337 aaKnown RBP19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 TNFAIP1Q13829 316 aa19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 HHIPL2Q6UWX4 724 aa19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 AIDAQ96BJ3 306 aa19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 ZDHHC15Q96MV8 337 aa19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 ZBTB40Q9NUA8 1239 aa19.35■□□□□ 0.69
CCDC28B-205ENST00000483009 PAPPA2Q9BXP8 1791 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 PRDX5P30044 214 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 ZNF157P51786 506 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 NOGQ13253 232 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 TTLL12Q14166 644 aaPredicted RBP19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 TNNI3KQ59H18 835 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 GORABQ5T7V8 394 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 MOB2Q70IA6 237 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 ZGPATQ8N5A5 531 aaKnown RBP19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 CCDC102AQ96A19 550 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 FPGT-TNNI3KV9GXZ4 949 aa19.34■□□□□ 0.69
CCDC28B-205ENST00000483009 THSD7BQ9C0I4 1608 aa19.33■□□□□ 0.69
CCDC28B-205ENST00000483009 LDHBP07195 334 aaKnown RBP19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 RASA3Q14644 834 aa19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 C20orf194Q5TEA3 1177 aa19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 APOBEC3HQ6NTF7 200 aaKnown RBP19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 ARMC9Q7Z3E5 817 aa19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 YTHDC1Q96MU7 727 aaKnown RBP19.33■□□□□ 0.68
CCDC28B-205ENST00000483009 FAM155AB1AL88 458 aaPredicted RBP19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 UBE2Q2LH0YL09 131 aa19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 FOXN1O15353 648 aa19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 SLC10A3P09131 477 aa19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 RPAP2Q8IXW5 612 aaPredicted RBP19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 TMOD2Q9NZR1 351 aa19.32■□□□□ 0.68
CCDC28B-205ENST00000483009 TCP10L2B9ZVM9 353 aa19.31■□□□□ 0.68
CCDC28B-205ENST00000483009 ARID4AP29374 1257 aaPredicted RBP19.31■□□□□ 0.68
CCDC28B-205ENST00000483009 DIXDC1Q155Q3 683 aa19.31■□□□□ 0.68
CCDC28B-205ENST00000483009 SUPT20HL1Q3ZLR7 823 aa19.31■□□□□ 0.68
CCDC28B-205ENST00000483009 DAGLAQ9Y4D2 1042 aa19.31■□□□□ 0.68
CCDC28B-205ENST00000483009 HMMRO75330 724 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 UQCRFS1P1P0C7P4 283 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 TNNI2P48788 182 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 CTCFP49711 727 aaPredicted RBP19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 PRKG1Q13976 671 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 NBPF12Q5TAG4 269 aaPredicted RBP19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 RASAL3Q86YV0 1011 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 ERC1Q8IUD2 1116 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 ZIC5Q96T25 663 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 DBNDD2Q9BQY9 259 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 BEGAINQ9BUH8 593 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 HMG20BQ9P0W2 317 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 ABCF2Q9UG63 623 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 EXOC6BQ9Y2D4 811 aa19.3■□□□□ 0.68
CCDC28B-205ENST00000483009 SSC5DA1L4H1 1573 aa19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 PPP1R12BO60237 982 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 HSP90AB4PQ58FF6 505 aa19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 FKBP1CQ5VVH2 108 aa19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 SPTY2D1Q68D10 685 aaPredicted RBP19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 SPATA5Q8NB90 893 aa19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 ANGEL1Q9UNK9 670 aaKnown RBP19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 PCNTO95613 3336 aa19.29■□□□□ 0.68
CCDC28B-205ENST00000483009 CACNB3P54284 484 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 MAP3K11Q16584 847 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 CCDC158Q5M9N0 1113 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 TTC39AQ5SRH9 613 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 LDLRAD1Q5T700 205 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 PI16Q6UXB8 463 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 DZIP1Q86YF9 867 aaKnown RBP19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 SIRT2Q8IXJ6 389 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 TEPSINQ96N21 525 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 ECM29Q5VYK3 1845 aa19.28■□□□□ 0.68
CCDC28B-205ENST00000483009 MCAMP43121 646 aa19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 KIF23Q02241 960 aaPredicted RBP19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 ERICH6Q7L0X2 663 aa19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 FAM83AQ86UY5 434 aa19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 EAF2Q96CJ1 260 aaPredicted RBP19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 TMEM39BQ9GZU3 492 aa19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 DBNLQ9UJU6 430 aaKnown RBP19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 FZD1Q9UP38 647 aa19.27■□□□□ 0.68
CCDC28B-205ENST00000483009 GAKO14976 1311 aa19.26■□□□□ 0.67
CCDC28B-205ENST00000483009 MYH13Q9UKX3 1938 aa19.26■□□□□ 0.67
CCDC28B-205ENST00000483009 CA12O43570 354 aa19.26■□□□□ 0.67
CCDC28B-205ENST00000483009 HSPA8P11142 646 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms