RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 CCDC82Q8N4S0 544 aa9.8□□□□□ -0.84
CLK1-212ENST00000482590 KRTAP4-12Q9BQ66 201 aa9.8□□□□□ -0.84
CLK1-212ENST00000482590 RBSNQ9H1K0 784 aa9.8□□□□□ -0.84
CLK1-212ENST00000482590 SRA1Q9HD15 236 aaKnown RBP9.8□□□□□ -0.84
CLK1-212ENST00000482590 VPS8Q8N3P4 1428 aa9.8□□□□□ -0.84
CLK1-212ENST00000482590 ACIN1Q9UKV3 1341 aaKnown RBP9.8□□□□□ -0.84
CLK1-212ENST00000482590 PZPP20742 1482 aa9.79□□□□□ -0.84
CLK1-212ENST00000482590 DHX29Q7Z478 1369 aaKnown RBP9.79□□□□□ -0.84
CLK1-212ENST00000482590 Q6ZS46 218 aa9.79□□□□□ -0.84
CLK1-212ENST00000482590 LRRC9Q6ZRR7 1453 aa9.79□□□□□ -0.84
CLK1-212ENST00000482590 FSTP19883 344 aa9.78□□□□□ -0.84
CLK1-212ENST00000482590 BRD2P25440 801 aaKnown RBP9.78□□□□□ -0.84
CLK1-212ENST00000482590 C16orf46Q6P387 395 aa9.78□□□□□ -0.84
CLK1-212ENST00000482590 MAP4K3Q8IVH8 894 aa9.78□□□□□ -0.84
CLK1-212ENST00000482590 ZMIZ1Q9ULJ6 1067 aa9.78□□□□□ -0.84
CLK1-212ENST00000482590 NEURL4Q96JN8 1562 aa9.78□□□□□ -0.84
CLK1-212ENST00000482590 IQGAP1P46940 1657 aa9.77□□□□□ -0.84
CLK1-212ENST00000482590 KRTAP1-3Q8IUG1 177 aa9.77□□□□□ -0.85
CLK1-212ENST00000482590 AGGF1Q8N302 714 aaeCLIP9.77□□□□□ -0.85
CLK1-212ENST00000482590 MTMR7Q9Y216 660 aa9.77□□□□□ -0.85
CLK1-212ENST00000482590 MAP3K1Q13233 1512 aa9.77□□□□□ -0.85
CLK1-212ENST00000482590 UGGT1Q9NYU2 1555 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 DEPDC5O75140 1603 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 TNFRSF10BO14763 440 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 COL13A1Q5TAT6 717 aaPredicted RBP9.76□□□□□ -0.85
CLK1-212ENST00000482590 CAPN12Q6ZSI9 719 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 OR13H1Q8NG92 308 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 PPME1Q9Y570 386 aa9.76□□□□□ -0.85
CLK1-212ENST00000482590 TNRQ92752 1358 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 DISP3Q9P2K9 1392 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 MROH1Q8NDA8 1641 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 NLRP1Q9C000 1473 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 UBAP1LF5GYI3 381 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 KIF3BO15066 747 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 SLC51AQ86UW1 340 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 CACTIN-AS1Q8N1I8 211 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 GALNT11Q8NCW6 608 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 DCAF11Q8TEB1 546 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 STK32AQ8WU08 396 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 COL26A1Q96A83 441 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 PUS7Q96PZ0 661 aaKnown RBP9.75□□□□□ -0.85
CLK1-212ENST00000482590 UBR1Q8IWV7 1749 aa9.75□□□□□ -0.85
CLK1-212ENST00000482590 ZNF335Q9H4Z2 1342 aaPredicted RBP9.75□□□□□ -0.85
CLK1-212ENST00000482590 PTPN23Q9H3S7 1636 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 ABCC3O15438 1527 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 CPS1P31327 1500 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 TSPY4P0CV99 314 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 TSPY10P0CW01 314 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 ATP11AP98196 1134 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 ELOAQ14241 798 aaKnown RBP9.74□□□□□ -0.85
CLK1-212ENST00000482590 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.74□□□□□ -0.85
CLK1-212ENST00000482590 MUC3BQ9H195 1237 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 SYNMO15061 1565 aa9.74□□□□□ -0.85
CLK1-212ENST00000482590 MYOM3Q5VTT5 1437 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 GLB1P16278 677 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 TMCO4Q5TGY1 634 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 PIK3R5Q8WYR1 880 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 UBL7Q96S82 380 aaPredicted RBP9.73□□□□□ -0.85
CLK1-212ENST00000482590 MKNK1Q9BUB5 465 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 WASHC2CQ9Y4E1 1318 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 MIA2Q96PC5 1412 aa9.73□□□□□ -0.85
CLK1-212ENST00000482590 PRDM15P57071 1507 aaPredicted RBP9.72□□□□□ -0.85
CLK1-212ENST00000482590 DUOX2Q9NRD8 1548 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 LINC01387J3KSC0 135 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 WISP1O95388 367 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 HYAL2Q12891 473 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 NAA30Q147X3 362 aaPredicted RBP9.72□□□□□ -0.85
CLK1-212ENST00000482590 PCMTD2Q9NV79 361 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 CXXC1Q9P0U4 656 aaPredicted RBP9.72□□□□□ -0.85
CLK1-212ENST00000482590 SHANK2Q9UPX8 1470 aa9.72□□□□□ -0.85
CLK1-212ENST00000482590 STRCP1A6NGW2 1772 aa9.71□□□□□ -0.85
CLK1-212ENST00000482590 TM4SF5O14894 197 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 SSTR4P31391 388 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 LCE3BQ5TA77 95 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 CEP135Q66GS9 1140 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 TXNDC11Q6PKC3 985 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 ADAMTSL4Q6UY14 1074 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 LACRTQ9GZZ8 138 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 RAXQ9Y2V3 346 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 VWDEQ8N2E2 1590 aa9.71□□□□□ -0.86
CLK1-212ENST00000482590 ZAP70P43403 619 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 CD97P48960 835 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 SRPK2P78362 688 aaKnown RBP9.7□□□□□ -0.86
CLK1-212ENST00000482590 AEBP1Q8IUX7 1158 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 FAM13BQ9NYF5 915 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 KCNK4Q9NYG8 393 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 ERVK-7P63135 1459 aa9.7□□□□□ -0.86
CLK1-212ENST00000482590 RBM25P49756 843 aaKnown RBP9.69□□□□□ -0.86
CLK1-212ENST00000482590 MFAP1P55081 439 aaKnown RBP9.69□□□□□ -0.86
CLK1-212ENST00000482590 SPACA7Q96KW9 195 aa9.69□□□□□ -0.86
CLK1-212ENST00000482590 RASSF4Q9H2L5 321 aa9.69□□□□□ -0.86
CLK1-212ENST00000482590 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.69□□□□□ -0.86
CLK1-212ENST00000482590 KDM5AP29375 1690 aaKnown RBP9.68□□□□□ -0.86
CLK1-212ENST00000482590 PIK3C2BO00750 1634 aa9.68□□□□□ -0.86
CLK1-212ENST00000482590 MED14O60244 1454 aa9.68□□□□□ -0.86
CLK1-212ENST00000482590 NPHP4O75161 1426 aaPredicted RBP9.68□□□□□ -0.86
CLK1-212ENST00000482590 ERBINQ96RT1 1412 aa9.68□□□□□ -0.86
CLK1-212ENST00000482590 ZBTB39O15060 712 aa9.68□□□□□ -0.86
CLK1-212ENST00000482590 SMNDC1O75940 238 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLK1-212ENST00000482590 CDC27P30260 824 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms