RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TLR7Q9NYK1 1049 aaKnown RBP10.03□□□□□ -0.8
USP54-212ENST00000480210 LRP2BPQ9P2M1 347 aa10.03□□□□□ -0.8
USP54-212ENST00000480210 TTF2Q9UNY4 1162 aaKnown RBP10.03□□□□□ -0.8
USP54-212ENST00000480210 ZBTB12Q9Y330 459 aaPredicted RBP10.03□□□□□ -0.8
USP54-212ENST00000480210 SALL3Q9BXA9 1300 aa10.03□□□□□ -0.8
USP54-212ENST00000480210 UTRNP46939 3433 aa10.03□□□□□ -0.8
USP54-212ENST00000480210 MYO1BO43795 1136 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 ZAP70P43403 619 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 KIAA0825Q8IV33 1275 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 PLEKHM2Q8IWE5 1019 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 MICALL2Q8IY33 904 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 C16orf71Q8IYS4 520 aaPredicted RBP10.02□□□□□ -0.81
USP54-212ENST00000480210 TEKT1Q969V4 418 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.02□□□□□ -0.81
USP54-212ENST00000480210 BOLA2Q9H3K6 86 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 TAF1DQ9H5J8 278 aaPredicted RBP10.02□□□□□ -0.81
USP54-212ENST00000480210 PAG1Q9NWQ8 432 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 ABCF2Q9UG63 623 aa10.02□□□□□ -0.81
USP54-212ENST00000480210 POTECB2RU33 542 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 CYP2E1P05181 493 aaPredicted RBP10.01□□□□□ -0.81
USP54-212ENST00000480210 ZFYP08048 801 aaPredicted RBP10.01□□□□□ -0.81
USP54-212ENST00000480210 EPS15P42566 896 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 DLGAP5Q15398 846 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 DZIP1Q86YF9 867 aaKnown RBP10.01□□□□□ -0.81
USP54-212ENST00000480210 CERS5Q8N5B7 392 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 EVI5LQ96CN4 794 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 MYOZ2Q9NPC6 264 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 RAI14Q9P0K7 980 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 PGAP2Q9UHJ9 254 aa10.01□□□□□ -0.81
USP54-212ENST00000480210 BAG3O95817 575 aa10□□□□□ -0.81
USP54-212ENST00000480210 PLCG2P16885 1265 aa10□□□□□ -0.81
USP54-212ENST00000480210 CRKP46108 304 aa10□□□□□ -0.81
USP54-212ENST00000480210 SCARF1Q14162 830 aa10□□□□□ -0.81
USP54-212ENST00000480210 KIF4BQ2VIQ3 1234 aa10□□□□□ -0.81
USP54-212ENST00000480210 LDHDQ86WU2 507 aa10□□□□□ -0.81
USP54-212ENST00000480210 CNTROBQ8N137 903 aa10□□□□□ -0.81
USP54-212ENST00000480210 ZNF784Q8NCA9 323 aaPredicted RBP10□□□□□ -0.81
USP54-212ENST00000480210 PI4K2BQ8TCG2 481 aa10□□□□□ -0.81
USP54-212ENST00000480210 NSUN4Q96CB9 384 aaKnown RBP10□□□□□ -0.81
USP54-212ENST00000480210 ZDHHC15Q96MV8 337 aa10□□□□□ -0.81
USP54-212ENST00000480210 DNAJC2Q99543 621 aaKnown RBP10□□□□□ -0.81
USP54-212ENST00000480210 NOL10Q9BSC4 688 aaKnown RBP10□□□□□ -0.81
USP54-212ENST00000480210 SNRKQ9NRH2 765 aa10□□□□□ -0.81
USP54-212ENST00000480210 RBM19Q9Y4C8 960 aaKnown RBP10□□□□□ -0.81
USP54-212ENST00000480210 MAST2Q6P0Q8 1798 aa10□□□□□ -0.81
USP54-212ENST00000480210 PITPNM2Q9BZ72 1349 aa10□□□□□ -0.81
USP54-212ENST00000480210 COL1A1P02452 1464 aaPredicted RBP9.99□□□□□ -0.81
USP54-212ENST00000480210 F8W031 263 aaPredicted RBP9.99□□□□□ -0.81
USP54-212ENST00000480210 HIP1O00291 1037 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 GOLIM4O00461 696 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 TOMM70O94826 608 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 PRDX5P30044 214 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 RBM5P52756 815 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP54-212ENST00000480210 UBE3CQ15386 1083 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 CFAP100Q494V2 611 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 FKBP1CQ5VVH2 108 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 NAA16Q6N069 864 aaPredicted RBP9.99□□□□□ -0.81
USP54-212ENST00000480210 KBTBD3Q8NAB2 608 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 ZBED3Q96IU2 234 aaPredicted RBP9.99□□□□□ -0.81
USP54-212ENST00000480210 MXD3Q9BW11 206 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 TMOD2Q9NZR1 351 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 JAG2Q9Y219 1238 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 GAKO14976 1311 aa9.99□□□□□ -0.81
USP54-212ENST00000480210 GPR75-ASB3A0A0A6YYF3 556 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 SPDYE2BA6NHP3 402 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 WNT10BO00744 389 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 NPM3O75607 178 aaKnown RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 IDH1O75874 414 aaKnown RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 SPDYE6P0CI01 402 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 TNNI2P48788 182 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 PPP4CP60510 307 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 MECOMQ03112 1051 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 TNFAIP1Q13829 316 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 PI16Q6UXB8 463 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 TBC1D9Q6ZT07 1266 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 SAMD7Q7Z3H4 446 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 APOBEC3FQ8IUX4 373 aaKnown RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 RBM46Q8TBY0 533 aaKnown RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 ZNF526Q8TF50 670 aaPredicted RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 DCPSQ96C86 337 aaKnown RBP9.98□□□□□ -0.81
USP54-212ENST00000480210 NMRK2Q9NPI5 230 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 MROH7-TTC4A0A0A0MT08 1334 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 RFX7Q2KHR2 1363 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 TRPM7Q96QT4 1865 aa9.98□□□□□ -0.81
USP54-212ENST00000480210 ADAMTSL1Q8N6G6 1762 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 KIF3CO14782 793 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 FSTL1Q12841 308 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 TBC1D10BQ4KMP7 808 aaPredicted RBP9.97□□□□□ -0.81
USP54-212ENST00000480210 EAPPQ56P03 285 aaPredicted RBP9.97□□□□□ -0.81
USP54-212ENST00000480210 RBM26Q5T8P6 1007 aaKnown RBP9.97□□□□□ -0.81
USP54-212ENST00000480210 SLC9C2Q5TAH2 1124 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 CHADLQ6NUI6 762 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 CDC37L1Q7L3B6 337 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 SMC1BQ8NDV3 1235 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 OTUD7AQ8TE49 926 aaPredicted RBP9.97□□□□□ -0.81
USP54-212ENST00000480210 ANTXR1Q9H6X2 564 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 PIH1D3Q9NQM4 214 aaKnown RBP9.97□□□□□ -0.81
USP54-212ENST00000480210 CLEC11AQ9Y240 323 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 PPP2R3BQ9Y5P8 575 aa9.97□□□□□ -0.81
USP54-212ENST00000480210 TRIM6-TRIM34B2RNG4 842 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms