RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 AMOTQ4VCS5 1084 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 PAXIP1Q6ZW49 1069 aaPredicted RBP15.42■□□□□ 0.06
USP42-206ENST00000479544 GJB4Q9NTQ9 266 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 STAP2Q9UGK3 403 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 MYO1BO43795 1136 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 HDXQ7Z353 690 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 CCDC113Q9H0I3 377 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 IGSF22Q8N9C0 903 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 CDK5RAP3Q96JB5 506 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 PLIN2Q99541 437 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 FLT4P35916 1363 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 EFCAB6Q5THR3 1501 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 POLR2DO15514 142 aaKnown RBP15.41■□□□□ 0.06
USP42-206ENST00000479544 COBLO75128 1261 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 PNMA6AP0CW24 399 aaPredicted RBP15.41■□□□□ 0.06
USP42-206ENST00000479544 TRIM21P19474 475 aaKnown RBP15.41■□□□□ 0.06
USP42-206ENST00000479544 CEP57Q86XR8 500 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 PGBD1Q96JS3 809 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 PDE11AQ9HCR9 933 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 EBAG9O00559 213 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 ALDH1L1O75891 902 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 ERCC3P19447 782 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 EEF2KMTQ96G04 330 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 MPHOSPH8Q99549 860 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 POTEB2H3BUK9 544 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 MAATS1Q7Z4T9 603 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 NBPF11Q86T75 865 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 CEP112Q8N8E3 955 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 CLIC6Q96NY7 704 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 SIGLEC1Q9BZZ2 1709 aa15.41■□□□□ 0.06
USP42-206ENST00000479544 RXRBP28702 533 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 SCRN1Q12765 414 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 TOM1L2Q6ZVM7 507 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 ZNF594Q96JF6 807 aaPredicted RBP15.4■□□□□ 0.06
USP42-206ENST00000479544 CLIC4Q9Y696 253 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 EDC4Q6P2E9 1401 aaKnown RBP15.4■□□□□ 0.06
USP42-206ENST00000479544 AP5Z1O43299 807 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 PAFAH1B1P43034 410 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 MTIF2P46199 727 aaKnown RBP15.4■□□□□ 0.06
USP42-206ENST00000479544 SLFNL1Q499Z3 407 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 LDHAL6AQ6ZMR3 332 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 WASF1Q92558 559 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 KCNH3Q9ULD8 1083 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 CEP131Q9UPN4 1083 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 SF3B2Q13435 895 aaKnown RBP15.4■□□□□ 0.06
USP42-206ENST00000479544 TTC21AQ8NDW8 1320 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 ARHGAP6O43182 974 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 SLC9C2Q5TAH2 1124 aa15.4■□□□□ 0.06
USP42-206ENST00000479544 AKR1B15C9JRZ8 316 aaPredicted RBP15.39■□□□□ 0.05
USP42-206ENST00000479544 E2F4Q16254 413 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 PFKFB1P16118 471 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 IQCEQ6IPM2 695 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 NFATC2IPQ8NCF5 419 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 hCG_1642624A0A1W2PR95 340 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 MACROD2A1Z1Q3 448 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 NLRP12P59046 1061 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 IFIT5Q13325 482 aaKnown RBP15.39■□□□□ 0.05
USP42-206ENST00000479544 CCDC96Q2M329 555 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 SLF1Q9BQI6 1058 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 PPP2R2CQ9Y2T4 447 aa15.39■□□□□ 0.05
USP42-206ENST00000479544 A0A1B0GUL7 405 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 AKR1B10O60218 316 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 RNASE9P60153 205 aaKnown RBP15.38■□□□□ 0.05
USP42-206ENST00000479544 IRX5P78411 483 aaPredicted RBP15.38■□□□□ 0.05
USP42-206ENST00000479544 CACNA2D4Q7Z3S7 1137 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 HELBQ8NG08 1087 aaPredicted RBP15.38■□□□□ 0.05
USP42-206ENST00000479544 MAP4K1Q92918 833 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 IMPACTQ9P2X3 320 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 WWC2Q6AWC2 1192 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 KIF6Q6ZMV9 814 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 TRIM47Q96LD4 638 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 GPHNQ9NQX3 736 aaPredicted RBP15.38■□□□□ 0.05
USP42-206ENST00000479544 MED14O60244 1454 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 ZMYND10O75800 440 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 IDEP14735 1019 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 ADD1P35611 737 aaKnown RBP15.38■□□□□ 0.05
USP42-206ENST00000479544 PI4K2BQ8TCG2 481 aa15.38■□□□□ 0.05
USP42-206ENST00000479544 B4E1Z4 1266 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 TTC19Q6DKK2 380 aaPredicted RBP15.37■□□□□ 0.05
USP42-206ENST00000479544 FAM135BQ49AJ0 1406 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 CYP21A2P08686 494 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 HOXC9P31274 260 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 TNNI3KQ59H18 835 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 MYSM1Q5VVJ2 828 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 ANKRD24Q8TF21 1146 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 FPGT-TNNI3KV9GXZ4 949 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 AOX1Q06278 1338 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 SPATA31A6Q5VVP1 1343 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 CMTR1Q8N1G2 835 aaKnown RBP15.37■□□□□ 0.05
USP42-206ENST00000479544 MYOM2P54296 1465 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 KRT18P05783 430 aaKnown RBP15.37■□□□□ 0.05
USP42-206ENST00000479544 NLRP5P59047 1200 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 PROSER3Q2NL68 480 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 CCDC178Q5BJE1 867 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 IFT81Q8WYA0 676 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.37■□□□□ 0.05
USP42-206ENST00000479544 CABP5Q9NP86 173 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 ELP1O95163 1332 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 NCOA3Q9Y6Q9 1424 aa15.37■□□□□ 0.05
USP42-206ENST00000479544 LIG3P49916 1009 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms