RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 ZNF408Q9H9D4 720 aa16.84■□□□□ 0.29
USF1-205ENST00000473969 PCDHB15Q9Y5E8 787 aa16.84■□□□□ 0.29
USF1-205ENST00000473969 PDS5AQ29RF7 1337 aaKnown RBP16.84■□□□□ 0.29
USF1-205ENST00000473969 SALL1Q9NSC2 1324 aa16.84■□□□□ 0.29
USF1-205ENST00000473969 SPDYE2BA6NHP3 402 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 ASTN2O75129 1339 aaPredicted RBP16.83■□□□□ 0.28
USF1-205ENST00000473969 SPDYE6P0CI01 402 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 ERICH6Q7L0X2 663 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 DZIP1Q86YF9 867 aaKnown RBP16.83■□□□□ 0.28
USF1-205ENST00000473969 DCTPP1Q9H773 170 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 CREBZFQ9NS37 354 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 HMG20BQ9P0W2 317 aa16.83■□□□□ 0.28
USF1-205ENST00000473969 DBNLQ9UJU6 430 aaKnown RBP16.83■□□□□ 0.28
USF1-205ENST00000473969 ADM5C9JUS6 153 aa16.82■□□□□ 0.28
USF1-205ENST00000473969 CELF2O95319 508 aaKnown RBP16.82■□□□□ 0.28
USF1-205ENST00000473969 GRIK5Q16478 980 aa16.82■□□□□ 0.28
USF1-205ENST00000473969 ZNF512BQ96KM6 892 aaPredicted RBP16.82■□□□□ 0.28
USF1-205ENST00000473969 PRMT6Q96LA8 375 aaPredicted RBP16.82■□□□□ 0.28
USF1-205ENST00000473969 VEZTQ9HBM0 779 aa16.82■□□□□ 0.28
USF1-205ENST00000473969 TMOD2Q9NZR1 351 aa16.82■□□□□ 0.28
USF1-205ENST00000473969 ABT1Q9ULW3 272 aaKnown RBP16.82■□□□□ 0.28
USF1-205ENST00000473969 PRDX5P30044 214 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 NF2P35240 595 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 MCAMP43121 646 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 HHIPL2Q6UWX4 724 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 EXOC6Q8TAG9 804 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 ZBED3Q96IU2 234 aaPredicted RBP16.81■□□□□ 0.28
USF1-205ENST00000473969 SNRKQ9NRH2 765 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 TLR7Q9NYK1 1049 aaKnown RBP16.81■□□□□ 0.28
USF1-205ENST00000473969 LRP2BPQ9P2M1 347 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 ARAP2Q8WZ64 1704 aa16.81■□□□□ 0.28
USF1-205ENST00000473969 CLRN2A0PK11 232 aa16.8■□□□□ 0.28
USF1-205ENST00000473969 GSTO1P78417 241 aa16.8■□□□□ 0.28
USF1-205ENST00000473969 TNFAIP1Q13829 316 aa16.8■□□□□ 0.28
USF1-205ENST00000473969 ZDHHC15Q96MV8 337 aa16.8■□□□□ 0.28
USF1-205ENST00000473969 RWDD1Q9H446 243 aaPredicted RBP16.8■□□□□ 0.28
USF1-205ENST00000473969 TDRD3Q9H7E2 651 aaKnown RBP16.8■□□□□ 0.28
USF1-205ENST00000473969 RAI14Q9P0K7 980 aa16.8■□□□□ 0.28
USF1-205ENST00000473969 COL1A1P02452 1464 aaPredicted RBP16.8■□□□□ 0.28
USF1-205ENST00000473969 LDHCP07864 332 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 TNNI2P48788 182 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 HTRA3P83110 453 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 FMR1Q06787 632 aaKnown RBP eCLIP16.79■□□□□ 0.28
USF1-205ENST00000473969 PI16Q6UXB8 463 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 C2orf69Q8N8R5 385 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 CDCA5Q96FF9 252 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 GPATCH3Q96I76 525 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 ZNF70Q9UC06 446 aaPredicted RBP16.79■□□□□ 0.28
USF1-205ENST00000473969 PCDHAC2Q9Y5I4 1007 aa16.79■□□□□ 0.28
USF1-205ENST00000473969 ZNF646O15015 1829 aaPredicted RBP16.79■□□□□ 0.28
USF1-205ENST00000473969 SMARCA5O60264 1052 aaPredicted RBP16.78■□□□□ 0.28
USF1-205ENST00000473969 ZAP70P43403 619 aa16.78■□□□□ 0.28
USF1-205ENST00000473969 HDAC1Q13547 482 aaPredicted RBP16.78■□□□□ 0.28
USF1-205ENST00000473969 TBC1D9Q6ZT07 1266 aa16.78■□□□□ 0.28
USF1-205ENST00000473969 GCC1Q96CN9 775 aa16.78■□□□□ 0.28
USF1-205ENST00000473969 DEFB129Q9H1M3 183 aa16.78■□□□□ 0.28
USF1-205ENST00000473969 SCAF8Q9UPN6 1271 aaKnown RBP16.78■□□□□ 0.28
USF1-205ENST00000473969 PPP2R3BQ9Y5P8 575 aa16.78■□□□□ 0.28
USF1-205ENST00000473969 MYH13Q9UKX3 1938 aa16.77■□□□□ 0.28
USF1-205ENST00000473969 IRX6P78412 446 aaPredicted RBP16.77■□□□□ 0.28
USF1-205ENST00000473969 DIXDC1Q155Q3 683 aa16.77■□□□□ 0.28
USF1-205ENST00000473969 SPDYE2Q495Y8 402 aa16.77■□□□□ 0.28
USF1-205ENST00000473969 CST9Q5W186 159 aa16.77■□□□□ 0.28
USF1-205ENST00000473969 PAXIP1Q6ZW49 1069 aaPredicted RBP16.77■□□□□ 0.28
USF1-205ENST00000473969 NOL10Q9BSC4 688 aaKnown RBP16.77■□□□□ 0.28
USF1-205ENST00000473969 TCP10L2B9ZVM9 353 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 IGSF3O75054 1194 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 MECOMQ03112 1051 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 TTLL12Q14166 644 aaPredicted RBP16.76■□□□□ 0.27
USF1-205ENST00000473969 TTF1Q15361 905 aaPredicted RBP16.76■□□□□ 0.27
USF1-205ENST00000473969 DEFB115Q30KQ5 88 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 DLK2Q6UY11 383 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 GBA2Q9HCG7 927 aaPredicted RBP16.76■□□□□ 0.27
USF1-205ENST00000473969 DAGLAQ9Y4D2 1042 aa16.76■□□□□ 0.27
USF1-205ENST00000473969 CYP2E1P05181 493 aaPredicted RBP16.75■□□□□ 0.27
USF1-205ENST00000473969 SUPT20HL1Q3ZLR7 823 aa16.75■□□□□ 0.27
USF1-205ENST00000473969 ANKRD45Q5TZF3 282 aa16.75■□□□□ 0.27
USF1-205ENST00000473969 PRAMEF18Q5VWM3 479 aa16.75■□□□□ 0.27
USF1-205ENST00000473969 APOBEC3HQ6NTF7 200 aaKnown RBP16.75■□□□□ 0.27
USF1-205ENST00000473969 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.75■□□□□ 0.27
USF1-205ENST00000473969 USP40Q9NVE5 1235 aa16.75■□□□□ 0.27
USF1-205ENST00000473969 MKRN1Q9UHC7 482 aaKnown RBP16.75■□□□□ 0.27
USF1-205ENST00000473969 IDH1O75874 414 aaKnown RBP16.74■□□□□ 0.27
USF1-205ENST00000473969 FKBP1BP68106 108 aa16.74■□□□□ 0.27
USF1-205ENST00000473969 RASA3Q14644 834 aa16.74■□□□□ 0.27
USF1-205ENST00000473969 NAA16Q6N069 864 aaPredicted RBP16.74■□□□□ 0.27
USF1-205ENST00000473969 FAM163AQ96GL9 167 aaPredicted RBP16.74■□□□□ 0.27
USF1-205ENST00000473969 DNAJC2Q99543 621 aaKnown RBP16.74■□□□□ 0.27
USF1-205ENST00000473969 TLL2Q9Y6L7 1015 aa16.74■□□□□ 0.27
USF1-205ENST00000473969 MROH7-TTC4A0A0A0MT08 1334 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 ATP5JP18859 108 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 HUNKP57058 714 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 MAP3K12Q12852 859 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 FKBP1CQ5VVH2 108 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 ARMC9Q7Z3E5 817 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 NSUN4Q96CB9 384 aaKnown RBP16.73■□□□□ 0.27
USF1-205ENST00000473969 KLRG1Q96E93 195 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 BOLA2Q9H3K6 86 aa16.73■□□□□ 0.27
USF1-205ENST00000473969 PPP1R12BO60237 982 aaPredicted RBP16.72■□□□□ 0.27
USF1-205ENST00000473969 BAG3O95817 575 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms