RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SERPINA10Q9UK55 444 aa23.5■■□□□ 1.35
SHH-205ENST00000472308 MAP3K9P80192 1104 aa23.49■■□□□ 1.35
SHH-205ENST00000472308 LACTBP83111 547 aaPredicted RBP23.49■■□□□ 1.35
SHH-205ENST00000472308 IFIT5Q13325 482 aaKnown RBP23.49■■□□□ 1.35
SHH-205ENST00000472308 DNAAF4Q8WXU2 420 aa23.49■■□□□ 1.35
SHH-205ENST00000472308 TTF2Q9UNY4 1162 aaKnown RBP23.49■■□□□ 1.35
SHH-205ENST00000472308 LAMA3Q16787 3333 aa23.48■■□□□ 1.35
SHH-205ENST00000472308 TCP10L2B9ZVM9 353 aa23.48■■□□□ 1.35
SHH-205ENST00000472308 TLR2O60603 784 aa23.48■■□□□ 1.35
SHH-205ENST00000472308 TWISTNBQ3B726 338 aaPredicted RBP23.48■■□□□ 1.35
SHH-205ENST00000472308 MFSD14BQ5SR56 506 aa23.48■■□□□ 1.35
SHH-205ENST00000472308 DZIP1LQ8IYY4 767 aaKnown RBP23.48■■□□□ 1.35
SHH-205ENST00000472308 COL6A3P12111 3177 aa23.48■■□□□ 1.35
SHH-205ENST00000472308 SPDYE5A6NIY4 337 aa23.47■■□□□ 1.35
SHH-205ENST00000472308 TDRD7Q8NHU6 1098 aaKnown RBP23.47■■□□□ 1.35
SHH-205ENST00000472308 RBM27Q9P2N5 1060 aaKnown RBP23.47■■□□□ 1.35
SHH-205ENST00000472308 CSADQ9Y600 493 aa23.47■■□□□ 1.35
SHH-205ENST00000472308 SNCAIPQ9Y6H5 919 aa23.47■■□□□ 1.35
SHH-205ENST00000472308 ZNF594Q96JF6 807 aaPredicted RBP23.46■■□□□ 1.35
SHH-205ENST00000472308 BTBD19C9JJ37 291 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 FKBP5Q13451 457 aaPredicted RBP23.45■■□□□ 1.34
SHH-205ENST00000472308 MTFR1Q15390 333 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 GRIK5Q16478 980 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 EPHA10Q5JZY3 1008 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 CHMP3Q9Y3E7 222 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 A0A0C4DFX4 3053 aa23.45■■□□□ 1.34
SHH-205ENST00000472308 PLIN1O60240 522 aa23.44■■□□□ 1.34
SHH-205ENST00000472308 CTGFP29279 349 aa23.44■■□□□ 1.34
SHH-205ENST00000472308 CRKP46108 304 aa23.44■■□□□ 1.34
SHH-205ENST00000472308 ZCCHC17Q9NP64 241 aaKnown RBP23.44■■□□□ 1.34
SHH-205ENST00000472308 CETPP11597 493 aa23.43■■□□□ 1.34
SHH-205ENST00000472308 GYG1P46976 350 aa23.43■■□□□ 1.34
SHH-205ENST00000472308 LMBR1LQ6UX01 489 aa23.43■■□□□ 1.34
SHH-205ENST00000472308 UBE2Q1Q7Z7E8 422 aa23.43■■□□□ 1.34
SHH-205ENST00000472308 PRO3102Q9H379 93 aa23.43■■□□□ 1.34
SHH-205ENST00000472308 IRF6O14896 467 aa23.42■■□□□ 1.34
SHH-205ENST00000472308 GNRH1P01148 92 aa23.42■■□□□ 1.34
SHH-205ENST00000472308 KIF22Q14807 665 aa23.42■■□□□ 1.34
SHH-205ENST00000472308 LDHAL6AQ6ZMR3 332 aa23.42■■□□□ 1.34
SHH-205ENST00000472308 FAM84BQ96KN1 310 aaPredicted RBP23.42■■□□□ 1.34
SHH-205ENST00000472308 PRKRIP1Q9H875 184 aaPredicted RBP23.42■■□□□ 1.34
SHH-205ENST00000472308 TNNI2P48788 182 aa23.41■■□□□ 1.34
SHH-205ENST00000472308 CACNB3P54284 484 aa23.41■■□□□ 1.34
SHH-205ENST00000472308 PRMT2P55345 433 aa23.41■■□□□ 1.34
SHH-205ENST00000472308 ERO1BQ86YB8 467 aa23.41■■□□□ 1.34
SHH-205ENST00000472308 ZKSCAN4Q969J2 545 aaPredicted RBP23.41■■□□□ 1.34
SHH-205ENST00000472308 WDHD1O75717 1129 aaPredicted RBP23.4■■□□□ 1.34
SHH-205ENST00000472308 ECM2O94769 699 aaPredicted RBP23.4■■□□□ 1.34
SHH-205ENST00000472308 HIBADHP31937 336 aaKnown RBP23.4■■□□□ 1.34
SHH-205ENST00000472308 SNAPC2Q13487 334 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 C17orf99Q6UX52 265 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 DPF3Q92784 378 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 TRIM47Q96LD4 638 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 WRNIP1Q96S55 665 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 CNNM1Q9NRU3 951 aa23.4■■□□□ 1.34
SHH-205ENST00000472308 CCDC57Q2TAC2 916 aa23.39■■□□□ 1.33
SHH-205ENST00000472308 BEND3Q5T5X7 828 aa23.39■■□□□ 1.33
SHH-205ENST00000472308 SRRDQ9UH36 339 aa23.39■■□□□ 1.33
SHH-205ENST00000472308 ADGRA2Q96PE1 1338 aa23.38■■□□□ 1.33
SHH-205ENST00000472308 F6X3S4 739 aa23.38■■□□□ 1.33
SHH-205ENST00000472308 PPIL2Q13356 520 aa23.38■■□□□ 1.33
SHH-205ENST00000472308 UBE4AQ14139 1066 aa23.38■■□□□ 1.33
SHH-205ENST00000472308 CPA4Q9UI42 421 aa23.38■■□□□ 1.33
SHH-205ENST00000472308 OSBPP22059 807 aa23.37■■□□□ 1.33
SHH-205ENST00000472308 CCDC27Q2M243 656 aa23.37■■□□□ 1.33
SHH-205ENST00000472308 TAF7LQ5H9L4 462 aa23.37■■□□□ 1.33
SHH-205ENST00000472308 WWC1Q8IX03 1113 aa23.37■■□□□ 1.33
SHH-205ENST00000472308 PSMC4P43686 418 aa23.36■■□□□ 1.33
SHH-205ENST00000472308 GJA8P48165 433 aa23.36■■□□□ 1.33
SHH-205ENST00000472308 PUS3Q9BZE2 481 aaKnown RBP23.36■■□□□ 1.33
SHH-205ENST00000472308 GRK4P32298 578 aa23.35■■□□□ 1.33
SHH-205ENST00000472308 HDLBPQ00341 1268 aaKnown RBP23.35■■□□□ 1.33
SHH-205ENST00000472308 IQSEC3Q9UPP2 1182 aaPredicted RBP23.35■■□□□ 1.33
SHH-205ENST00000472308 RIPOR2Q9Y4F9 1068 aa23.35■■□□□ 1.33
SHH-205ENST00000472308 GRM8O00222 908 aa23.34■■□□□ 1.33
SHH-205ENST00000472308 GJB1P08034 283 aa23.34■■□□□ 1.33
SHH-205ENST00000472308 CCL5P13501 91 aa23.34■■□□□ 1.33
SHH-205ENST00000472308 FAM83AQ86UY5 434 aa23.34■■□□□ 1.33
SHH-205ENST00000472308 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.34■■□□□ 1.33
SHH-205ENST00000472308 NKX2-3Q8TAU0 364 aa23.34■■□□□ 1.33
SHH-205ENST00000472308 FANCIQ9NVI1 1328 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 RPAP1Q9BWH6 1393 aaPredicted RBP23.33■■□□□ 1.33
SHH-205ENST00000472308 DLL1O00548 723 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 MOGSQ13724 837 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 FBXO33Q7Z6M2 555 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 ANKRD23Q86SG2 305 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 TEKT1Q969V4 418 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 ZDHHC15Q96MV8 337 aa23.33■■□□□ 1.33
SHH-205ENST00000472308 IL16Q14005 1332 aa23.33■■□□□ 1.32
SHH-205ENST00000472308 CACNA1FO60840 1977 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 PDHXO00330 501 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 VAMP4O75379 141 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 INPP5BP32019 993 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 PPATQ06203 517 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 CHAF1AQ13111 956 aaPredicted RBP23.32■■□□□ 1.32
SHH-205ENST00000472308 FKBP1CQ5VVH2 108 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 APOBEC3HQ6NTF7 200 aaKnown RBP23.32■■□□□ 1.32
SHH-205ENST00000472308 RAET1EQ8TD07 263 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 HTATIP2Q9BUP3 242 aa23.32■■□□□ 1.32
SHH-205ENST00000472308 MYPNQ86TC9 1320 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms