RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 MAFBQ9Y5Q3 323 aaPredicted RBP10.2□□□□□ -0.78
SCN9A-206ENST00000472119 ZFYVE16Q7Z3T8 1539 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 CCDC141Q6ZP82 1450 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 ANKRD34AQ69YU3 496 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 GIMAP7Q8NHV1 300 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 COL26A1Q96A83 441 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 CCDC39Q9UFE4 941 aa10.19□□□□□ -0.78
SCN9A-206ENST00000472119 ATP10AO60312 1499 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 TCOF1Q13428 1488 aaKnown RBP10.18□□□□□ -0.78
SCN9A-206ENST00000472119 ABCC5O15440 1437 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 EPHA1P21709 976 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 HYAL2Q12891 473 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 ADAMTSL4Q6UY14 1074 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 ANKMY2Q8IV38 441 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 TP53INP2Q8IXH6 220 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 FBXL6Q8N531 539 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 KLHDC7BQ96G42 594 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 RASSF4Q9H2L5 321 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 SH2B1Q9NRF2 756 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-206ENST00000472119 HIF3AQ9Y2N7 669 aa10.18□□□□□ -0.78
SCN9A-206ENST00000472119 GAS2O43903 313 aaKnown RBP10.17□□□□□ -0.78
SCN9A-206ENST00000472119 WEE1P30291 646 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 MLECQ14165 292 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 TRIP4Q15650 581 aaPredicted RBP10.17□□□□□ -0.78
SCN9A-206ENST00000472119 CBLL1Q75N03 491 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 OR13H1Q8NG92 308 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 SEC31BQ9NQW1 1179 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.17□□□□□ -0.78
SCN9A-206ENST00000472119 ARHGEF5Q12774 1597 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 HECW2Q9P2P5 1572 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 ARHGEF40Q8TER5 1519 aa10.17□□□□□ -0.78
SCN9A-206ENST00000472119 DAPK1P53355 1430 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 FAM177BA6PVY3 158 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L15C9J2P7 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L10C9JJH3 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L13C9JLJ4 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L12C9JPN9 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L11C9JVI0 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L21D6R901 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L18D6R9N7 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L22D6RA61 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L17D6RBQ6 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L19D6RCP7 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L20D6RJB6 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 USP17L24Q0WX57 530 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 LCE4AQ5TA78 99 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 FDX2Q6P4F2 183 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 OSBPL1AQ9BXW6 950 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 RRP7BPQ9NSQ0 103 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 ATP7AQ04656 1500 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 KIDINS220Q9ULH0 1771 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 RTEL1-TNFRSF6BF6WH68 1400 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 C9orf84Q5VXU9 1444 aa10.16□□□□□ -0.78
SCN9A-206ENST00000472119 SCNN1AP37088 669 aa10.15□□□□□ -0.78
SCN9A-206ENST00000472119 MSMPQ1L6U9 139 aa10.15□□□□□ -0.78
SCN9A-206ENST00000472119 FBXL18Q96ME1 805 aa10.15□□□□□ -0.78
SCN9A-206ENST00000472119 RNF208Q9H0X6 261 aa10.15□□□□□ -0.78
SCN9A-206ENST00000472119 RRBP1Q9P2E9 1410 aaKnown RBP10.15□□□□□ -0.79
SCN9A-206ENST00000472119 ABCA6Q8N139 1617 aa10.15□□□□□ -0.79
SCN9A-206ENST00000472119 DIP2CQ9Y2E4 1556 aa10.14□□□□□ -0.79
SCN9A-206ENST00000472119 UBAP1LF5GYI3 381 aa10.14□□□□□ -0.79
SCN9A-206ENST00000472119 FOSL1P15407 271 aa10.14□□□□□ -0.79
SCN9A-206ENST00000472119 MAP4P27816 1152 aaKnown RBP10.14□□□□□ -0.79
SCN9A-206ENST00000472119 PTPRKQ15262 1439 aa10.14□□□□□ -0.79
SCN9A-206ENST00000472119 INO80Q9ULG1 1556 aaPredicted RBP10.14□□□□□ -0.79
SCN9A-206ENST00000472119 F13BP05160 661 aa10.13□□□□□ -0.79
SCN9A-206ENST00000472119 RXRBP28702 533 aa10.13□□□□□ -0.79
SCN9A-206ENST00000472119 VSIG10LQ86VR7 867 aa10.13□□□□□ -0.79
SCN9A-206ENST00000472119 RUSC1Q9BVN2 902 aa10.13□□□□□ -0.79
SCN9A-206ENST00000472119 DHX29Q7Z478 1369 aaKnown RBP10.13□□□□□ -0.79
SCN9A-206ENST00000472119 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.13□□□□□ -0.79
SCN9A-206ENST00000472119 A2MP01023 1474 aa10.12□□□□□ -0.79
SCN9A-206ENST00000472119 DNMT1P26358 1616 aaKnown RBP10.12□□□□□ -0.79
SCN9A-206ENST00000472119 JUNBP17275 347 aaPredicted RBP10.12□□□□□ -0.79
SCN9A-206ENST00000472119 PTPRAP18433 802 aa10.12□□□□□ -0.79
SCN9A-206ENST00000472119 NLRP12P59046 1061 aa10.12□□□□□ -0.79
SCN9A-206ENST00000472119 SGO2Q562F6 1265 aa10.12□□□□□ -0.79
SCN9A-206ENST00000472119 COX20Q5RI15 118 aa10.12□□□□□ -0.79
SCN9A-206ENST00000472119 FAM196BA6NMK8 535 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 KIF3BO15066 747 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 ITGB5P18084 799 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 TTC39BQ5VTQ0 682 aaPredicted RBP10.11□□□□□ -0.79
SCN9A-206ENST00000472119 GGT6Q6P531 493 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 NFXL1Q6ZNB6 911 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 ETFBKMTQ8IXQ9 262 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 ANKRD30AQ9BXX3 1397 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 KIF15Q9NS87 1388 aa10.11□□□□□ -0.79
SCN9A-206ENST00000472119 SHANK2Q9UPX8 1470 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 SIGLEC1Q9BZZ2 1709 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 MAST1Q9Y2H9 1570 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 NCOA1Q15788 1441 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 PRNPP04156 253 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 PBX4Q9BYU1 374 aa10.1□□□□□ -0.79
SCN9A-206ENST00000472119 GLMNQ92990 594 aa10.09□□□□□ -0.79
SCN9A-206ENST00000472119 A6NJR5 290 aa10.08□□□□□ -0.8
SCN9A-206ENST00000472119 H3BRJ5 948 aa10.08□□□□□ -0.8
SCN9A-206ENST00000472119 CABP4P57796 275 aa10.08□□□□□ -0.8
SCN9A-206ENST00000472119 COL19A1Q14993 1142 aa10.08□□□□□ -0.8
SCN9A-206ENST00000472119 ZMYND15Q9H091 742 aa10.08□□□□□ -0.8
SCN9A-206ENST00000472119 REREQ9P2R6 1566 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 276.1 ms