RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MRVI1Q9Y6F6 885 aa14.92□□□□□ -0.02
COL6A3-209ENST00000472056 ZFYVE9O95405 1425 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 CABS1Q96KC9 395 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 STK10O94804 968 aaKnown RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 PPM1FP49593 454 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 TTC36A6NLP5 189 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 ZNF569Q5MCW4 686 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 CNNM4Q6P4Q7 775 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 EPSTI1Q96J88 318 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 EIF2AQ9BY44 585 aaKnown RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 CRNKL1Q9BZJ0 848 aaKnown RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 DENND2CQ68D51 928 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 MCMDC2Q4G0Z9 681 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 ESYT1Q9BSJ8 1104 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 UTP14CQ5TAP6 766 aaKnown RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 GKAP1Q5VSY0 366 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 SMARCC2Q8TAQ2 1214 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 MAK16Q9BXY0 300 aaKnown RBP14.91□□□□□ -0.02
COL6A3-209ENST00000472056 DRC3Q9H069 523 aa14.91□□□□□ -0.02
COL6A3-209ENST00000472056 DEUP1Q05D60 604 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 FLIIQ13045 1269 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 FRMD4BQ9Y2L6 1034 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 ZMAT2Q96NC0 199 aaKnown RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 GUCA1BQ9UMX6 200 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 ALG1Q9BT22 464 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 CABP1Q9NZU7 370 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 CNPY2Q9Y2B0 182 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 MRPS9P82933 396 aaKnown RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 TSPYL2Q9H2G4 693 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 RFC1P35251 1148 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 HOMER3Q9NSC5 361 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 MIER3Q7Z3K6 550 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 PLXNC1O60486 1568 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 PLCD1P51178 756 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 RNASELQ05823 741 aaKnown RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 MICU3Q86XE3 530 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 ZNF526Q8TF50 670 aaPredicted RBP14.9□□□□□ -0.02
COL6A3-209ENST00000472056 RUNDC3BQ96NL0 473 aa14.9□□□□□ -0.02
COL6A3-209ENST00000472056 GOLGA8KD6RF30 607 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 ERCC5P28715 1186 aaPredicted RBP14.89□□□□□ -0.03
COL6A3-209ENST00000472056 EFCAB13Q8IY85 973 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 C6orf50Q9HD87 102 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 ZSCAN26Q16670 478 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 IFT140Q96RY7 1462 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 IFIT1BQ5T764 474 aaKnown RBP14.89□□□□□ -0.03
COL6A3-209ENST00000472056 CCT2P78371 535 aaKnown RBP14.89□□□□□ -0.03
COL6A3-209ENST00000472056 PPP1R1BQ9UD71 204 aaPredicted RBP14.89□□□□□ -0.03
COL6A3-209ENST00000472056 GIPC1O14908 333 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 RNF40O75150 1001 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 ATP2C2O75185 946 aa14.89□□□□□ -0.03
COL6A3-209ENST00000472056 ZNF500O60304 480 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-209ENST00000472056 SLC26A6Q9BXS9 759 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 KCNK9Q9NPC2 374 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 POLR1AO95602 1720 aaPredicted RBP14.88□□□□□ -0.03
COL6A3-209ENST00000472056 DCAF8L1A6NGE4 600 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 NCBP1Q09161 790 aaKnown RBP14.88□□□□□ -0.03
COL6A3-209ENST00000472056 MLKLQ8NB16 471 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 FAM71BQ8TC56 605 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 KRT2P35908 639 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 TFIP11Q9UBB9 837 aaKnown RBP14.88□□□□□ -0.03
COL6A3-209ENST00000472056 PRR16Q569H4 304 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 IFT81Q8WYA0 676 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 KCNG1Q9UIX4 513 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 FLOT1O75955 427 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 RBM42Q9BTD8 480 aaKnown RBP14.88□□□□□ -0.03
COL6A3-209ENST00000472056 DNAJC25Q9H1X3 360 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 FAM169AQ9Y6X4 670 aa14.88□□□□□ -0.03
COL6A3-209ENST00000472056 SATB1Q01826 763 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 TACC3Q9Y6A5 838 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 EFCAB8A8MWE9 144 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 TRIM37O94972 964 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 LMOD1P29536 600 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-209ENST00000472056 ASIC1P78348 528 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 PLCG2P16885 1265 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 NBPF6Q5VWK0 638 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 TMEM132EQ6IEE7 984 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 NBPF4Q96M43 638 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 SSH2Q76I76 1423 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 TCHHQ07283 1943 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 IBTKQ9P2D0 1353 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-209ENST00000472056 SDSP20132 328 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 PAXIP1Q6ZW49 1069 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-209ENST00000472056 IFNKQ9P0W0 207 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 PIK3C2GO75747 1445 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 CCT6BQ92526 530 aa14.87□□□□□ -0.03
COL6A3-209ENST00000472056 ARHGEF2Q92974 986 aaKnown RBP14.87□□□□□ -0.03
COL6A3-209ENST00000472056 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.87□□□□□ -0.03
COL6A3-209ENST00000472056 MUM1Q2TAK8 710 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 DTHD1Q6ZMT9 781 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 CCDC65Q8IXS2 484 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 GTF3C6Q969F1 213 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 EFCC1Q9HA90 598 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 PTGS1P23219 599 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 TSPY2A6NKD2 308 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 GNA14O95837 355 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 MAGI1Q96QZ7 1491 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-209ENST00000472056 TRIM58Q8NG06 486 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 ESCO1Q5FWF5 840 aa14.86□□□□□ -0.03
COL6A3-209ENST00000472056 SYT10Q6XYQ8 523 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms