RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 POLA2Q14181 598 aa19.41■□□□□ 0.7
HDAC6-218ENST00000470942 CCDC102BQ68D86 513 aa19.41■□□□□ 0.7
HDAC6-218ENST00000470942 MOB2Q70IA6 237 aa19.41■□□□□ 0.7
HDAC6-218ENST00000470942 TDRD3Q9H7E2 651 aaKnown RBP19.41■□□□□ 0.7
HDAC6-218ENST00000470942 DENND2AQ9ULE3 1009 aa19.41■□□□□ 0.7
HDAC6-218ENST00000470942 HDLBPQ00341 1268 aaKnown RBP19.4■□□□□ 0.7
HDAC6-218ENST00000470942 PRKG1Q13976 671 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 SSH3Q8TE77 659 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 TEKT1Q969V4 418 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 CCDC102AQ96A19 550 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 XAGE2Q96GT9 111 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 BEGAINQ9BUH8 593 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 ZNF70Q9UC06 446 aaPredicted RBP19.4■□□□□ 0.7
HDAC6-218ENST00000470942 SUGT1Q9Y2Z0 365 aa19.4■□□□□ 0.7
HDAC6-218ENST00000470942 COL1A1P02452 1464 aaPredicted RBP19.4■□□□□ 0.7
HDAC6-218ENST00000470942 UBE2Q2LH0YL09 131 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 SEMA3EO15041 775 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 SURF6O75683 361 aaKnown RBP19.39■□□□□ 0.69
HDAC6-218ENST00000470942 NOGQ13253 232 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 SPDYE2Q495Y8 402 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 GORABQ5T7V8 394 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.39■□□□□ 0.69
HDAC6-218ENST00000470942 MAST3O60307 1309 aa19.39■□□□□ 0.69
HDAC6-218ENST00000470942 CTCFP49711 727 aaPredicted RBP19.38■□□□□ 0.69
HDAC6-218ENST00000470942 MVPQ14764 893 aaKnown RBP19.38■□□□□ 0.69
HDAC6-218ENST00000470942 COG6Q9Y2V7 657 aa19.38■□□□□ 0.69
HDAC6-218ENST00000470942 PPP2R3BQ9Y5P8 575 aa19.38■□□□□ 0.69
HDAC6-218ENST00000470942 TNFAIP1Q13829 316 aa19.37■□□□□ 0.69
HDAC6-218ENST00000470942 RASA3Q14644 834 aa19.37■□□□□ 0.69
HDAC6-218ENST00000470942 ARMC9Q7Z3E5 817 aa19.37■□□□□ 0.69
HDAC6-218ENST00000470942 ZIC5Q96T25 663 aa19.37■□□□□ 0.69
HDAC6-218ENST00000470942 MRIQ9BWK5 157 aa19.37■□□□□ 0.69
HDAC6-218ENST00000470942 FAM155AB1AL88 458 aaPredicted RBP19.36■□□□□ 0.69
HDAC6-218ENST00000470942 TCP10L2B9ZVM9 353 aa19.36■□□□□ 0.69
HDAC6-218ENST00000470942 LDHBP07195 334 aaKnown RBP19.36■□□□□ 0.69
HDAC6-218ENST00000470942 SUPT20HL1Q3ZLR7 823 aa19.36■□□□□ 0.69
HDAC6-218ENST00000470942 COL13A1Q5TAT6 717 aaPredicted RBP19.36■□□□□ 0.69
HDAC6-218ENST00000470942 CEP85Q6P2H3 762 aa19.36■□□□□ 0.69
HDAC6-218ENST00000470942 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.36■□□□□ 0.69
HDAC6-218ENST00000470942 ZDHHC15Q96MV8 337 aa19.36■□□□□ 0.69
HDAC6-218ENST00000470942 DDX19BQ9UMR2 479 aa19.36■□□□□ 0.69
HDAC6-218ENST00000470942 ANGEL1Q9UNK9 670 aaKnown RBP19.36■□□□□ 0.69
HDAC6-218ENST00000470942 SLC10A3P09131 477 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 PRDX5P30044 214 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 TNNI2P48788 182 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 RASGRF1Q13972 1273 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 NBPF12Q5TAG4 269 aaPredicted RBP19.35■□□□□ 0.69
HDAC6-218ENST00000470942 HHIPL2Q6UWX4 724 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 ZGPATQ8N5A5 531 aaKnown RBP19.35■□□□□ 0.69
HDAC6-218ENST00000470942 YTHDC1Q96MU7 727 aaKnown RBP19.35■□□□□ 0.69
HDAC6-218ENST00000470942 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.35■□□□□ 0.69
HDAC6-218ENST00000470942 FZD1Q9UP38 647 aa19.35■□□□□ 0.69
HDAC6-218ENST00000470942 SALL1Q9NSC2 1324 aa19.34■□□□□ 0.69
HDAC6-218ENST00000470942 KIF23Q02241 960 aaPredicted RBP19.34■□□□□ 0.69
HDAC6-218ENST00000470942 RASAL3Q86YV0 1011 aa19.34■□□□□ 0.69
HDAC6-218ENST00000470942 TMOD2Q9NZR1 351 aa19.34■□□□□ 0.69
HDAC6-218ENST00000470942 ABCF2Q9UG63 623 aa19.34■□□□□ 0.69
HDAC6-218ENST00000470942 NOP58Q9Y2X3 529 aaKnown RBP19.34■□□□□ 0.69
HDAC6-218ENST00000470942 MYH2Q9UKX2 1941 aa19.33■□□□□ 0.69
HDAC6-218ENST00000470942 PPP1R12BO60237 982 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-218ENST00000470942 LBX1P52954 281 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 CACNB3P54284 484 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 DIXDC1Q155Q3 683 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 TNNI3KQ59H18 835 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 APOBEC3HQ6NTF7 200 aaKnown RBP19.33■□□□□ 0.68
HDAC6-218ENST00000470942 CHMP4BQ9H444 224 aaKnown RBP19.33■□□□□ 0.68
HDAC6-218ENST00000470942 GPR108Q9NPR9 543 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 FPGT-TNNI3KV9GXZ4 949 aa19.33■□□□□ 0.68
HDAC6-218ENST00000470942 AKAP11Q9UKA4 1901 aa19.32■□□□□ 0.68
HDAC6-218ENST00000470942 ZBTB22O15209 634 aa19.32■□□□□ 0.68
HDAC6-218ENST00000470942 HSPA8P11142 646 aaKnown RBP19.32■□□□□ 0.68
HDAC6-218ENST00000470942 DAGLAQ9Y4D2 1042 aa19.32■□□□□ 0.68
HDAC6-218ENST00000470942 PDS5AQ29RF7 1337 aaKnown RBP19.31■□□□□ 0.68
HDAC6-218ENST00000470942 PDE3AQ14432 1141 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 C20orf194Q5TEA3 1177 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 SPTY2D1Q68D10 685 aaPredicted RBP19.31■□□□□ 0.68
HDAC6-218ENST00000470942 DZIP1Q86YF9 867 aaKnown RBP19.31■□□□□ 0.68
HDAC6-218ENST00000470942 TMEM39BQ9GZU3 492 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 PRDM10Q9NQV6 1147 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 ZBTB40Q9NUA8 1239 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 HMG20BQ9P0W2 317 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 TSKSQ9UJT2 592 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 EXOC6BQ9Y2D4 811 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 SSC5DA1L4H1 1573 aa19.31■□□□□ 0.68
HDAC6-218ENST00000470942 AK9Q5TCS8 1911 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 UQCRFS1P1P0C7P4 283 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 ARID4AP29374 1257 aaPredicted RBP19.3■□□□□ 0.68
HDAC6-218ENST00000470942 CCDC158Q5M9N0 1113 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 TTC39AQ5SRH9 613 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 LDLRAD1Q5T700 205 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 ERICH6Q7L0X2 663 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 RPAP2Q8IXW5 612 aaPredicted RBP19.3■□□□□ 0.68
HDAC6-218ENST00000470942 SPATA5Q8NB90 893 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 DBNDD2Q9BQY9 259 aa19.3■□□□□ 0.68
HDAC6-218ENST00000470942 CA12O43570 354 aa19.29■□□□□ 0.68
HDAC6-218ENST00000470942 USP2O75604 605 aaPredicted RBP19.29■□□□□ 0.68
HDAC6-218ENST00000470942 IREB2P48200 963 aaKnown RBP19.29■□□□□ 0.68
HDAC6-218ENST00000470942 MKRN3Q13064 507 aaKnown RBP19.29■□□□□ 0.68
HDAC6-218ENST00000470942 PI16Q6UXB8 463 aa19.29■□□□□ 0.68
HDAC6-218ENST00000470942 SLC10A4Q96EP9 437 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms