RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 LRP10Q7Z4F1 713 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 KBTBD3Q8NAB2 608 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 KLHDC4Q8TBB5 520 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 NEUROD6Q96NK8 337 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 REPIN1Q9BWE0 567 aaKnown RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 SLC24A3Q9HC58 644 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 TLR7Q9NYK1 1049 aaKnown RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 DBNLQ9UJU6 430 aaKnown RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 XIRP1Q702N8 1843 aaKnown RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 SOS2Q07890 1332 aaPredicted RBP9.46□□□□□ -0.9
SMC4-212ENST00000470240 GLI3P10071 1580 aa9.46□□□□□ -0.9
SMC4-212ENST00000470240 STARD3NLO95772 234 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 ZFYP08048 801 aaPredicted RBP9.45□□□□□ -0.9
SMC4-212ENST00000470240 ADCK5Q3MIX3 580 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 EPHA10Q5JZY3 1008 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 CCDC158Q5M9N0 1113 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.45□□□□□ -0.9
SMC4-212ENST00000470240 NAP1L5Q96NT1 182 aaPredicted RBP9.45□□□□□ -0.9
SMC4-212ENST00000470240 NEK1Q96PY6 1258 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 SCAND2PQ9GZW5 306 aaPredicted RBP9.45□□□□□ -0.9
SMC4-212ENST00000470240 RBSNQ9H1K0 784 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 STRN4Q9NRL3 753 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 SLAIN2Q9P270 581 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 CEP126Q9P2H0 1117 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 CTNNA3Q9UI47 895 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 ZNF609O15014 1411 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 TNS2Q63HR2 1409 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 KCPQ6ZWJ8 1503 aa9.45□□□□□ -0.9
SMC4-212ENST00000470240 H3BQV1 296 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 EYA2O00167 538 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 TAF5LO75529 589 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 CPA1P15085 419 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 CASP7P55210 303 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 ME3Q16798 604 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 Q3C1V9 767 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 FOXD4L6Q3SYB3 417 aaPredicted RBP9.44□□□□□ -0.9
SMC4-212ENST00000470240 USPL1Q5W0Q7 1092 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 FOXD4L3Q6VB84 417 aaPredicted RBP9.44□□□□□ -0.9
SMC4-212ENST00000470240 DDX54Q8TDD1 881 aaKnown RBP9.44□□□□□ -0.9
SMC4-212ENST00000470240 DBNDD2Q9BQY9 259 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 DSCC1Q9BVC3 393 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 PRKD2Q9BZL6 878 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 ZBTB3Q9H5J0 574 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 PAG1Q9NWQ8 432 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 MTMR6Q9Y217 621 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 CNPY2Q9Y2B0 182 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 ABCC12Q96J65 1359 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 TJP1Q07157 1748 aa9.44□□□□□ -0.9
SMC4-212ENST00000470240 ELP1O95163 1332 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 RNF223E7ERA6 249 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 IFIT1P09914 478 aaKnown RBP9.43□□□□□ -0.9
SMC4-212ENST00000470240 PIP4K2AP48426 406 aaPredicted RBP9.43□□□□□ -0.9
SMC4-212ENST00000470240 HMGN5P82970 282 aaKnown RBP9.43□□□□□ -0.9
SMC4-212ENST00000470240 FOXO4P98177 505 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 TTC39AQ5SRH9 613 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 ZSCAN25Q6NSZ9 544 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 LLPHQ9BRT6 129 aaKnown RBP9.43□□□□□ -0.9
SMC4-212ENST00000470240 GDPD2Q9HCC8 539 aa9.43□□□□□ -0.9
SMC4-212ENST00000470240 NHSL1Q5SYE7 1610 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 GOLIM4O00461 696 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 HOXA2O43364 376 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 LARGE1O95461 756 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 PCCAP05165 728 aaPredicted RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 CCDC192P0DO97 292 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 HSPA2P54652 639 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 IFIT5Q13325 482 aaKnown RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 TCIRG1Q13488 830 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 NBPF14Q5TI25 921 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 NBPF10Q6P3W6 841 aaKnown RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 DDX46Q7L014 1031 aaKnown RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 ZNF589Q86UQ0 364 aaPredicted RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 PARP9Q8IXQ6 854 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 NBPF15Q8N660 670 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 JARID2Q92833 1246 aaPredicted RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 PDLIM2Q96JY6 352 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.42□□□□□ -0.9
SMC4-212ENST00000470240 ZSCAN16Q9H4T2 348 aaPredicted RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 TPCN1Q9ULQ1 816 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 ZNF330Q9Y3S2 320 aaPredicted RBP9.42□□□□□ -0.9
SMC4-212ENST00000470240 TCHHQ07283 1943 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 SHANK3Q9BYB0 1731 aa9.42□□□□□ -0.9
SMC4-212ENST00000470240 GOLGA6L6A8MZA4 724 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 PPEF1O14829 653 aaPredicted RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 RNF113AO15541 343 aaKnown RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 A1BGP04217 495 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 TPM3P06753 285 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 TPM2P07951 284 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 DNM1Q05193 864 aaKnown RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 KIAA2012Q0VF49 1180 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 TRIM28Q13263 835 aaKnown RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 TTLL7Q6ZT98 887 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 DHX32Q7L7V1 743 aaKnown RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 NECAB1Q8N987 351 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 ANKLE1Q8NAG6 615 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 RNF214Q8ND24 703 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 GTF3C6Q969F1 213 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 SPATA32Q96LK8 384 aa9.41□□□□□ -0.9
SMC4-212ENST00000470240 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
SMC4-212ENST00000470240 CFAP45Q9UL16 551 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms