RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 GNB5O14775 395 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 U2SURPO15042 1029 aaKnown RBP7.62□□□□□ -1.19
SYNE1-219ENST00000469439 LRRC69Q6ZNQ3 347 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 CHSY3Q70JA7 882 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 SUV39H2Q9H5I1 410 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 PRDM11Q9NQV5 511 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 CDK12Q9NYV4 1490 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-219ENST00000469439 AKAP12Q02952 1782 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 MON2Q7Z3U7 1717 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 JCADQ9P266 1359 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 PIK3R2O00459 728 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 EVA1CP58658 441 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 ARHGEF25Q86VW2 580 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 RHPN1Q8TCX5 695 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 RUNDC1Q96C34 613 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 ABCC6O95255 1503 aa7.61□□□□□ -1.19
SYNE1-219ENST00000469439 MAP3K19Q56UN5 1328 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 HOXC9P31274 260 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 XPCQ01831 940 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-219ENST00000469439 GRIN2CQ14957 1233 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 AMOTQ4VCS5 1084 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 TSEN2Q8NCE0 465 aaKnown RBP7.6□□□□□ -1.19
SYNE1-219ENST00000469439 ZNF594Q96JF6 807 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-219ENST00000469439 MDFIQ99750 246 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 PRR12Q9ULL5 1215 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 MAFBQ9Y5Q3 323 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-219ENST00000469439 STRCP1A6NGW2 1772 aa7.6□□□□□ -1.19
SYNE1-219ENST00000469439 AHDC1Q5TGY3 1603 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-219ENST00000469439 SFI1A8K8P3 1242 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 HMGB2P26583 209 aaKnown RBP7.59□□□□□ -1.19
SYNE1-219ENST00000469439 PCBP4P57723 403 aaKnown RBP7.59□□□□□ -1.19
SYNE1-219ENST00000469439 HNRNPUQ00839 825 aaKnown RBP eCLIP7.59□□□□□ -1.19
SYNE1-219ENST00000469439 RRS1Q15050 365 aaKnown RBP7.59□□□□□ -1.19
SYNE1-219ENST00000469439 C1orf53Q5VUE5 145 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 NUTM2GQ5VZR2 741 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 GAS2L2Q8NHY3 880 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 CHMP3Q9Y3E7 222 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 GTF3C3Q9Y5Q9 886 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 PXDNQ92626 1479 aa7.59□□□□□ -1.19
SYNE1-219ENST00000469439 KIF20BQ96Q89 1820 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 HTATSF1O43719 755 aaKnown RBP7.58□□□□□ -1.2
SYNE1-219ENST00000469439 C21orf2O43822 256 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 IL13P35225 146 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 ZC3H6P61129 1189 aaKnown RBP7.58□□□□□ -1.2
SYNE1-219ENST00000469439 CCDC27Q2M243 656 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 RAPGEF4Q8WZA2 1011 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 RTF1Q92541 710 aaKnown RBP7.58□□□□□ -1.2
SYNE1-219ENST00000469439 PHACTR1Q9C0D0 580 aa7.58□□□□□ -1.2
SYNE1-219ENST00000469439 ZBED9Q6R2W3 1325 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 ZBTB7CA1YPR0 619 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 HSP90AB1P08238 724 aaKnown RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 SFSWAPQ12872 951 aaKnown RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 PLEKHO1Q53GL0 409 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 SYT9Q86SS6 491 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 HSH2DQ96JZ2 352 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 NEUROD4Q9HD90 331 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 NOP53Q9NZM5 478 aaKnown RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 TFIP11Q9UBB9 837 aaKnown RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 SPG7Q9UQ90 795 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 THRAP3Q9Y2W1 955 aaKnown RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 MED1Q15648 1581 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-219ENST00000469439 NRKQ7Z2Y5 1582 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 ANKRD26Q9UPS8 1709 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 SLIT3O75094 1523 aa7.57□□□□□ -1.2
SYNE1-219ENST00000469439 ELOA3CA0A087WX78 387 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-219ENST00000469439 ELOA3DA6NLF2 546 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-219ENST00000469439 RASA1P20936 1047 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 EIF4A2Q14240 407 aaKnown RBP7.56□□□□□ -1.2
SYNE1-219ENST00000469439 ELOA3BQ3SY89 546 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 HSP90AB2PQ58FF8 381 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 C1orf141Q5JVX7 400 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 MEX3CQ5U5Q3 659 aaKnown RBP7.56□□□□□ -1.2
SYNE1-219ENST00000469439 WDR63Q8IWG1 891 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 STAG2Q8N3U4 1231 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 ELOA3Q8NG57 546 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 ANKRD24Q8TF21 1146 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 MYH16Q9H6N6 1097 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 HCN4Q9Y3Q4 1203 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 RBM19Q9Y4C8 960 aaKnown RBP7.56□□□□□ -1.2
SYNE1-219ENST00000469439 USP54Q70EL1 1684 aa7.56□□□□□ -1.2
SYNE1-219ENST00000469439 ROBO1Q9Y6N7 1651 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 A6NJR5 290 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 PPP1R12BO60237 982 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-219ENST00000469439 ADAM23O75077 832 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 SIN3BO75182 1162 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 KCNQ4P56696 695 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 TYRO3Q06418 890 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 SULT6B1Q6IMI4 303 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 TOM1L2Q6ZVM7 507 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 FBXO41Q8TF61 875 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 TNFRSF25Q93038 417 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 TRIM11Q96F44 468 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 SLC30A3Q99726 388 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 CARD10Q9BWT7 1032 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 BRD7Q9NPI1 651 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 NLRP2Q9NX02 1062 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 ANKIB1Q9P2G1 1089 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 KIAA0232Q92628 1395 aa7.55□□□□□ -1.2
SYNE1-219ENST00000469439 XIRP1Q702N8 1843 aaKnown RBP7.55□□□□□ -1.2
SYNE1-219ENST00000469439 WDR17Q8IZU2 1322 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms