RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 RPLP1P05386 114 aaKnown RBP5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 PCSK2P16519 638 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 CD33P20138 364 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 MX2P20592 715 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 TNNT2P45379 298 aaPredicted RBP5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 XPCQ01831 940 aaPredicted RBP5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 DNM1Q05193 864 aaKnown RBP5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 EDEM1Q92611 657 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 COL25A1Q9BXS0 654 aaPredicted RBP5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 MBIPQ9NS73 344 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 HCN2Q9UL51 889 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 BRPF3Q9ULD4 1205 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 KNDC1Q76NI1 1749 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 MSH6P52701 1360 aa5.5□□□□□ -1.53
TMEM39A-204ENST00000468545 XRN1Q8IZH2 1706 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 EGFRP00533 1210 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 USP5P45974 858 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 TRIP4Q15650 581 aaPredicted RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 NUTM2GQ5VZR2 741 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 MORC1Q86VD1 984 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 CMTR1Q8N1G2 835 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 DDX17Q92841 729 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 CITED4Q96RK1 184 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 GGNBP2Q9H3C7 697 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 EFCC1Q9HA90 598 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 DCTN4Q9UJW0 460 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 POLIQ9UNA4 740 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 NSFL1CQ9UNZ2 370 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 FNDC3AQ9Y2H6 1198 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 USP20Q9Y2K6 914 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 KCNMB2Q9Y691 235 aa5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 KTN1Q86UP2 1357 aaKnown RBP5.49□□□□□ -1.53
TMEM39A-204ENST00000468545 NSD3Q9BZ95 1437 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 ADGRL3Q9HAR2 1447 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 LRRC7Q96NW7 1537 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 STRCP1A6NGW2 1772 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 A0A1W2PP64 1363 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 BMP4P12644 408 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 MAP2K3P46734 347 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 PIP4K2BP78356 416 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 CTBSQ01459 385 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 SPEM2Q0P670 501 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 CCINQ13939 588 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 RNFT1Q5M7Z0 435 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 KRT28Q7Z3Y7 464 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 NME9Q86XW9 330 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 GJD3Q8N144 294 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 RBCK1Q9BYM8 510 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 PRKRIP1Q9H875 184 aaPredicted RBP5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 CCDC87Q9NVE4 849 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 CGNL1Q0VF96 1302 aa5.48□□□□□ -1.53
TMEM39A-204ENST00000468545 NWD1Q149M9 1564 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 NKTRP30414 1462 aaKnown RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 ANKRD36BQ8N2N9 1353 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 UBAP1LF5GYI3 381 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 FYB1O15117 783 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 XYLBO75191 536 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 FBLN1P23142 703 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 MAPK1P28482 360 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 MARSP56192 900 aaKnown RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 SRSF11Q05519 484 aaKnown RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 EHHADHQ08426 723 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 GRIN2CQ14957 1233 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 RALBP1Q15311 655 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 CCDC27Q2M243 656 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 TMCO4Q5TGY1 634 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 ZNF468Q5VIY5 522 aaPredicted RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 TTC16Q8NEE8 873 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 YTHDC1Q96MU7 727 aaKnown RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 GSX2Q9BZM3 304 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 AVENQ9NQS1 362 aaPredicted RBP5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 TTC21BQ7Z4L5 1316 aa5.47□□□□□ -1.53
TMEM39A-204ENST00000468545 NINLQ9Y2I6 1382 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 C2CD2LO14523 706 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 PPM1GO15355 546 aaPredicted RBP5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 ARAFP10398 606 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 PDE3BQ13370 1112 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 CCDC184Q52MB2 194 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 PDE12Q6L8Q7 609 aaKnown RBP5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 BRINP3Q76B58 766 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 COG3Q96JB2 828 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 PNMA5Q96PV4 448 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 FAM129BQ96TA1 746 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 SLC30A3Q99726 388 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 MRS2Q9HD23 443 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 PRR12Q9ULL5 1215 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 NCOA3Q9Y6Q9 1424 aa5.46□□□□□ -1.54
TMEM39A-204ENST00000468545 NALCNQ8IZF0 1738 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 ATP7BP35670 1465 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 C1orf167Q5SNV9 1468 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 RGPD8O14715 1765 aaPredicted RBP5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 TOM1O60784 492 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 NFKB1P19838 968 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 PPP2R1AP30153 589 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 C8orf34Q49A92 452 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 XKR5Q6UX68 686 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 ZNF438Q7Z4V0 828 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 RAB44Q7Z6P3 723 aaPredicted RBP5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 NLRP13Q86W25 1043 aa5.45□□□□□ -1.54
TMEM39A-204ENST00000468545 ZSCAN29Q8IWY8 852 aaPredicted RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms