RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 MAST3O60307 1309 aa23.73■■□□□ 1.39
COL7A1-207ENST00000467985 TEKT1Q969V4 418 aa23.72■■□□□ 1.39
COL7A1-207ENST00000467985 CSRNP1Q96S65 589 aa23.72■■□□□ 1.39
COL7A1-207ENST00000467985 GNL3LQ9NVN8 582 aaKnown RBP23.72■■□□□ 1.39
COL7A1-207ENST00000467985 ZNF70Q9UC06 446 aaPredicted RBP23.72■■□□□ 1.39
COL7A1-207ENST00000467985 ZBED9Q6R2W3 1325 aa23.72■■□□□ 1.39
COL7A1-207ENST00000467985 AKAP11Q9UKA4 1901 aa23.72■■□□□ 1.39
COL7A1-207ENST00000467985 UNCXA6NJT0 531 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 SRGAP3O43295 1099 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 CAPN15O75808 1086 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 GNAI2P04899 355 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 LDLRAD1Q5T700 205 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 WDR66Q8TBY9 1149 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 ANGEL1Q9UNK9 670 aaKnown RBP23.71■■□□□ 1.39
COL7A1-207ENST00000467985 MYH13Q9UKX3 1938 aa23.71■■□□□ 1.39
COL7A1-207ENST00000467985 PRKG1Q13976 671 aa23.7■■□□□ 1.38
COL7A1-207ENST00000467985 RASA3Q14644 834 aa23.7■■□□□ 1.38
COL7A1-207ENST00000467985 MAP3K11Q16584 847 aa23.7■■□□□ 1.38
COL7A1-207ENST00000467985 CLUAP1Q96AJ1 413 aa23.7■■□□□ 1.38
COL7A1-207ENST00000467985 TDRD3Q9H7E2 651 aaKnown RBP23.7■■□□□ 1.38
COL7A1-207ENST00000467985 PA2G4Q9UQ80 394 aaKnown RBP23.7■■□□□ 1.38
COL7A1-207ENST00000467985 AOX1Q06278 1338 aa23.69■■□□□ 1.38
COL7A1-207ENST00000467985 TNNI2P48788 182 aa23.69■■□□□ 1.38
COL7A1-207ENST00000467985 RNF186Q9NXI6 227 aa23.69■■□□□ 1.38
COL7A1-207ENST00000467985 SEMA3EO15041 775 aa23.68■■□□□ 1.38
COL7A1-207ENST00000467985 TRPA1O75762 1119 aa23.68■■□□□ 1.38
COL7A1-207ENST00000467985 GRIK5Q16478 980 aa23.68■■□□□ 1.38
COL7A1-207ENST00000467985 ZDHHC15Q96MV8 337 aa23.68■■□□□ 1.38
COL7A1-207ENST00000467985 SSC5DA1L4H1 1573 aa23.68■■□□□ 1.38
COL7A1-207ENST00000467985 ZBTB22O15209 634 aa23.67■■□□□ 1.38
COL7A1-207ENST00000467985 TNNQ9UQP3 1299 aa23.67■■□□□ 1.38
COL7A1-207ENST00000467985 AKAP2Q9Y2D5 859 aa23.67■■□□□ 1.38
COL7A1-207ENST00000467985 IREB2P48200 963 aaKnown RBP23.66■■□□□ 1.38
COL7A1-207ENST00000467985 SREBF2Q12772 1141 aa23.66■■□□□ 1.38
COL7A1-207ENST00000467985 NBPF12Q5TAG4 269 aaPredicted RBP23.66■■□□□ 1.38
COL7A1-207ENST00000467985 HHIPL2Q6UWX4 724 aa23.66■■□□□ 1.38
COL7A1-207ENST00000467985 SLC10A4Q96EP9 437 aa23.66■■□□□ 1.38
COL7A1-207ENST00000467985 DENND2AQ9ULE3 1009 aa23.66■■□□□ 1.38
COL7A1-207ENST00000467985 TM4SF4P48230 202 aa23.65■■□□□ 1.38
COL7A1-207ENST00000467985 FTSJ3Q8IY81 847 aaKnown RBP23.65■■□□□ 1.38
COL7A1-207ENST00000467985 TMEM57Q8N5G2 664 aa23.65■■□□□ 1.38
COL7A1-207ENST00000467985 TMOD2Q9NZR1 351 aa23.65■■□□□ 1.38
COL7A1-207ENST00000467985 CASP8AP2Q9UKL3 1982 aa23.65■■□□□ 1.38
COL7A1-207ENST00000467985 TCP10L2B9ZVM9 353 aa23.64■■□□□ 1.37
COL7A1-207ENST00000467985 FKBP1CQ5VVH2 108 aa23.64■■□□□ 1.37
COL7A1-207ENST00000467985 SPRYD7Q5W111 196 aa23.64■■□□□ 1.37
COL7A1-207ENST00000467985 SALL1Q9NSC2 1324 aa23.63■■□□□ 1.37
COL7A1-207ENST00000467985 ZBTB48P10074 688 aaPredicted RBP23.63■■□□□ 1.37
COL7A1-207ENST00000467985 PHKA1P46020 1223 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 TFCP2Q12800 502 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 CCDC102BQ68D86 513 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 APOBEC3HQ6NTF7 200 aaKnown RBP23.62■■□□□ 1.37
COL7A1-207ENST00000467985 ANKRD13AQ8IZ07 590 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 ZGPATQ8N5A5 531 aaKnown RBP23.62■■□□□ 1.37
COL7A1-207ENST00000467985 ABHD8Q96I13 439 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 TEPSINQ96N21 525 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 FZD1Q9UP38 647 aa23.62■■□□□ 1.37
COL7A1-207ENST00000467985 PDS5AQ29RF7 1337 aaKnown RBP23.61■■□□□ 1.37
COL7A1-207ENST00000467985 USP2O75604 605 aaPredicted RBP23.61■■□□□ 1.37
COL7A1-207ENST00000467985 LDHBP07195 334 aaKnown RBP23.61■■□□□ 1.37
COL7A1-207ENST00000467985 INHBEP58166 350 aa23.61■■□□□ 1.37
COL7A1-207ENST00000467985 MKRN3Q13064 507 aaKnown RBP23.61■■□□□ 1.37
COL7A1-207ENST00000467985 MVPQ14764 893 aaKnown RBP23.61■■□□□ 1.37
COL7A1-207ENST00000467985 FAM83AQ86UY5 434 aa23.61■■□□□ 1.37
COL7A1-207ENST00000467985 HOOK2Q96ED9 719 aa23.61■■□□□ 1.37
COL7A1-207ENST00000467985 A0A1B0GUL7 405 aa23.6■■□□□ 1.37
COL7A1-207ENST00000467985 ADORA1P30542 326 aa23.6■■□□□ 1.37
COL7A1-207ENST00000467985 TIMM10P62072 90 aa23.6■■□□□ 1.37
COL7A1-207ENST00000467985 G3BP1Q13283 466 aaKnown RBP eCLIP23.6■■□□□ 1.37
COL7A1-207ENST00000467985 CLMNQ96JQ2 1002 aa23.6■■□□□ 1.37
COL7A1-207ENST00000467985 TMEM39BQ9GZU3 492 aa23.6■■□□□ 1.37
COL7A1-207ENST00000467985 PNMA6EA0A0J9YXQ4 647 aa23.59■■□□□ 1.37
COL7A1-207ENST00000467985 MANSC4A6NHS7 340 aaPredicted RBP23.59■■□□□ 1.37
COL7A1-207ENST00000467985 WNK4Q96J92 1243 aa23.59■■□□□ 1.37
COL7A1-207ENST00000467985 ALDH1A1P00352 501 aa23.58■■□□□ 1.37
COL7A1-207ENST00000467985 PRDX5P30044 214 aa23.58■■□□□ 1.37
COL7A1-207ENST00000467985 ITPRIPQ8IWB1 547 aa23.58■■□□□ 1.37
COL7A1-207ENST00000467985 XAGE2Q96GT9 111 aa23.58■■□□□ 1.37
COL7A1-207ENST00000467985 CACNB3P54284 484 aa23.57■■□□□ 1.36
COL7A1-207ENST00000467985 DGKZQ13574 1117 aa23.57■■□□□ 1.36
COL7A1-207ENST00000467985 NEUROD6Q96NK8 337 aa23.57■■□□□ 1.36
COL7A1-207ENST00000467985 MCOLN1Q9GZU1 580 aa23.57■■□□□ 1.36
COL7A1-207ENST00000467985 DAGLAQ9Y4D2 1042 aa23.57■■□□□ 1.36
COL7A1-207ENST00000467985 RPAP1Q9BWH6 1393 aaPredicted RBP23.56■■□□□ 1.36
COL7A1-207ENST00000467985 LAMB1P07942 1786 aa23.56■■□□□ 1.36
COL7A1-207ENST00000467985 RASGRF1Q13972 1273 aa23.56■■□□□ 1.36
COL7A1-207ENST00000467985 DIXDC1Q155Q3 683 aa23.56■■□□□ 1.36
COL7A1-207ENST00000467985 NOM1Q5C9Z4 860 aaKnown RBP23.56■■□□□ 1.36
COL7A1-207ENST00000467985 GORABQ5T7V8 394 aa23.56■■□□□ 1.36
COL7A1-207ENST00000467985 SPTY2D1Q68D10 685 aaPredicted RBP23.56■■□□□ 1.36
COL7A1-207ENST00000467985 CFHR5Q9BXR6 569 aa23.56■■□□□ 1.36
COL7A1-207ENST00000467985 ATP8B2P98198 1209 aa23.55■■□□□ 1.36
COL7A1-207ENST00000467985 POLA2Q14181 598 aa23.55■■□□□ 1.36
COL7A1-207ENST00000467985 CDAN1Q8IWY9 1227 aa23.55■■□□□ 1.36
COL7A1-207ENST00000467985 SLF2Q8IX21 1173 aa23.55■■□□□ 1.36
COL7A1-207ENST00000467985 SSH3Q8TE77 659 aa23.55■■□□□ 1.36
COL7A1-207ENST00000467985 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.55■■□□□ 1.36
COL7A1-207ENST00000467985 OTOFQ9HC10 1997 aa23.54■■□□□ 1.36
COL7A1-207ENST00000467985 ZBTB7BO15156 539 aaPredicted RBP23.54■■□□□ 1.36
COL7A1-207ENST00000467985 MS4A1P11836 297 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms