RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 CCDC93Q567U6 631 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 ARSIQ5FYB1 569 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 TTC39AQ5SRH9 613 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 TBC1D9Q6ZT07 1266 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 PODNQ7Z5L7 613 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 SPATA5Q8NB90 893 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 EVI5LQ96CN4 794 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 COA1Q9GZY4 146 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 GNL3LQ9NVN8 582 aaKnown RBP7.25□□□□□ -1.25
USP39-213ENST00000467885 IQSEC3Q9UPP2 1182 aaPredicted RBP7.25□□□□□ -1.25
USP39-213ENST00000467885 TNRC6CQ9HCJ0 1690 aaKnown RBP7.25□□□□□ -1.25
USP39-213ENST00000467885 TAF1P21675 1872 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 ANKRD31Q8N7Z5 1873 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 SEMA3EO15041 775 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 CHGBP05060 677 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 YBX3P16989 372 aaKnown RBP eCLIP7.24□□□□□ -1.25
USP39-213ENST00000467885 CHMLP26374 656 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 GRIK5Q16478 980 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 SLFNL1Q499Z3 407 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 TPRNQ4KMQ1 711 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 SOGA3Q5TF21 947 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 ARHGAP27Q6ZUM4 889 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 TICAM2Q86XR7 235 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 KBTBD3Q8NAB2 608 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 SUPT20HQ8NEM7 779 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 RILPL2Q969X0 211 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 GPATCH3Q96I76 525 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 EYA3Q99504 573 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 PIH1D3Q9NQM4 214 aaKnown RBP7.24□□□□□ -1.25
USP39-213ENST00000467885 ZNF277Q9NRM2 450 aaPredicted RBP7.24□□□□□ -1.25
USP39-213ENST00000467885 PAG1Q9NWQ8 432 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 DENND2AQ9ULE3 1009 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 FAM205AQ6ZU69 1335 aa7.24□□□□□ -1.25
USP39-213ENST00000467885 YDJCA8MPS7 323 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 TRIM6-TRIM34B2RNG4 842 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 GOLIM4O00461 696 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 GTF2IP78347 998 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 AOC3Q16853 763 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 C8orf34Q49A92 452 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 TTLL5Q6EMB2 1281 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 ZNF804AQ7Z570 1209 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 VPS37DQ86XT2 251 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 ZNF384Q8TF68 577 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 KHSRPQ92945 711 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP39-213ENST00000467885 DNAJC2Q99543 621 aaKnown RBP7.23□□□□□ -1.25
USP39-213ENST00000467885 BACH2Q9BYV9 841 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 ZNF609O15014 1411 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 LTBP3Q9NS15 1303 aa7.23□□□□□ -1.25
USP39-213ENST00000467885 SLX4Q8IY92 1834 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 MED23Q9ULK4 1368 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 TCRBV5S4A2TA0A5A2 114 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 RNF113AO15541 343 aaKnown RBP7.22□□□□□ -1.25
USP39-213ENST00000467885 VIL1P09327 827 aaKnown RBP7.22□□□□□ -1.25
USP39-213ENST00000467885 IARSP41252 1262 aaKnown RBP7.22□□□□□ -1.25
USP39-213ENST00000467885 CXCL9Q07325 125 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 TTF1Q15361 905 aaPredicted RBP7.22□□□□□ -1.25
USP39-213ENST00000467885 CNTROBQ8N137 903 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 CERS5Q8N5B7 392 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 WDR66Q8TBY9 1149 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 MRIQ9BWK5 157 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 DBNDD1Q9H9R9 158 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 ZNRF3Q9ULT6 936 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 LAMB2P55268 1798 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 PDS5AQ29RF7 1337 aaKnown RBP7.22□□□□□ -1.25
USP39-213ENST00000467885 SALL1Q9NSC2 1324 aa7.22□□□□□ -1.25
USP39-213ENST00000467885 FZD9O00144 591 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 PPIP5K2O43314 1243 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 FRAT2O75474 233 aaPredicted RBP7.21□□□□□ -1.26
USP39-213ENST00000467885 ADD2P35612 726 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 FKBP1AP62942 108 aaKnown RBP7.21□□□□□ -1.26
USP39-213ENST00000467885 DACT2Q5SW24 774 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 SLC9C2Q5TAH2 1124 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 STRIP1Q5VSL9 837 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 LARGE2Q8N3Y3 721 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 OSBP2Q969R2 916 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 FAM227BQ96M60 508 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 SEC62Q99442 399 aaKnown RBP7.21□□□□□ -1.26
USP39-213ENST00000467885 GMLQ99445 158 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 MXD3Q9BW11 206 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 IL25Q9H293 177 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 TAOK3Q9H2K8 898 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 JAG2Q9Y219 1238 aa7.21□□□□□ -1.26
USP39-213ENST00000467885 LRP5O75197 1615 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 USP17L3A6NCW0 530 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 USP17L4A6NCW7 530 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 ECE2O60344 883 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 IGSF3O75054 1194 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 CDC45O75419 566 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 PRDX5P30044 214 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 MECOMQ03112 1051 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 CHAF1AQ13111 956 aaPredicted RBP7.2□□□□□ -1.26
USP39-213ENST00000467885 UBE3CQ15386 1083 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 ZMYM1Q5SVZ6 1142 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 ERICH6Q7L0X2 663 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 USP17L1Q7RTZ2 530 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 FBXO22Q8NEZ5 403 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 NSUN4Q96CB9 384 aaKnown RBP7.2□□□□□ -1.26
USP39-213ENST00000467885 ESYT1Q9BSJ8 1104 aa7.2□□□□□ -1.26
USP39-213ENST00000467885 PUS7LQ9H0K6 701 aaKnown RBP7.2□□□□□ -1.26
USP39-213ENST00000467885 LRP2BPQ9P2M1 347 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms