RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 CDCA7LQ96GN5 454 aa26.44■■□□□ 1.82
COL9A3-207ENST00000467819 USP2O75604 605 aaPredicted RBP26.43■■□□□ 1.82
COL9A3-207ENST00000467819 PKN2Q16513 984 aaKnown RBP26.43■■□□□ 1.82
COL9A3-207ENST00000467819 NOM1Q5C9Z4 860 aaKnown RBP26.43■■□□□ 1.82
COL9A3-207ENST00000467819 CFHR5Q9BXR6 569 aa26.43■■□□□ 1.82
COL9A3-207ENST00000467819 SMC4Q9NTJ3 1288 aa26.43■■□□□ 1.82
COL9A3-207ENST00000467819 TCP10L2B9ZVM9 353 aa26.42■■□□□ 1.82
COL9A3-207ENST00000467819 FKTNO75072 461 aa26.42■■□□□ 1.82
COL9A3-207ENST00000467819 ALDH1A1P00352 501 aa26.42■■□□□ 1.82
COL9A3-207ENST00000467819 IFNL1Q8IU54 200 aa26.42■■□□□ 1.82
COL9A3-207ENST00000467819 UNCXA6NJT0 531 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 BCAMP50895 628 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 INHBEP58166 350 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 ALDH1L2Q3SY69 923 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 CDAN1Q8IWY9 1227 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 ANKRD13AQ8IZ07 590 aa26.41■■□□□ 1.82
COL9A3-207ENST00000467819 IGF2BP3O00425 579 aaKnown RBP eCLIP26.4■■□□□ 1.82
COL9A3-207ENST00000467819 GJA5P36382 358 aa26.4■■□□□ 1.82
COL9A3-207ENST00000467819 TBC1D22AQ8WUA7 517 aa26.4■■□□□ 1.82
COL9A3-207ENST00000467819 PUM3Q15397 648 aaKnown RBP26.39■■□□□ 1.82
COL9A3-207ENST00000467819 TEPSINQ96N21 525 aa26.39■■□□□ 1.82
COL9A3-207ENST00000467819 TMEM39BQ9GZU3 492 aa26.39■■□□□ 1.82
COL9A3-207ENST00000467819 IFIT1P09914 478 aaKnown RBP26.38■■□□□ 1.81
COL9A3-207ENST00000467819 TNNI2P48788 182 aa26.38■■□□□ 1.81
COL9A3-207ENST00000467819 ELP3Q9H9T3 547 aa26.38■■□□□ 1.81
COL9A3-207ENST00000467819 FGFR2P21802 821 aa26.37■■□□□ 1.81
COL9A3-207ENST00000467819 RFX5P48382 616 aaPredicted RBP26.37■■□□□ 1.81
COL9A3-207ENST00000467819 TEKT1Q969V4 418 aa26.37■■□□□ 1.81
COL9A3-207ENST00000467819 EYA2O00167 538 aa26.36■■□□□ 1.81
COL9A3-207ENST00000467819 CACNB3P54284 484 aa26.36■■□□□ 1.81
COL9A3-207ENST00000467819 HDLBPQ00341 1268 aaKnown RBP26.36■■□□□ 1.81
COL9A3-207ENST00000467819 FBXO46Q6PJ61 603 aaPredicted RBP26.36■■□□□ 1.81
COL9A3-207ENST00000467819 OPTNQ96CV9 577 aa26.36■■□□□ 1.81
COL9A3-207ENST00000467819 KIF16BQ96L93 1317 aa26.35■■□□□ 1.81
COL9A3-207ENST00000467819 UBTFL1P0CB47 393 aaPredicted RBP26.34■■□□□ 1.81
COL9A3-207ENST00000467819 SLC5A1P13866 664 aa26.34■■□□□ 1.81
COL9A3-207ENST00000467819 AK9Q5TCS8 1911 aa26.33■■□□□ 1.81
COL9A3-207ENST00000467819 OTUD7BQ6GQQ9 843 aa26.33■■□□□ 1.81
COL9A3-207ENST00000467819 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.33■■□□□ 1.81
COL9A3-207ENST00000467819 TRMT2AQ8IZ69 625 aaKnown RBP26.33■■□□□ 1.81
COL9A3-207ENST00000467819 CNKSR2Q8WXI2 1034 aa26.33■■□□□ 1.81
COL9A3-207ENST00000467819 SIL1Q9H173 461 aa26.33■■□□□ 1.81
COL9A3-207ENST00000467819 MAST3O60307 1309 aa26.33■■□□□ 1.81
COL9A3-207ENST00000467819 CRHR2Q13324 411 aa26.32■■□□□ 1.8
COL9A3-207ENST00000467819 VGLL4Q14135 290 aa26.32■■□□□ 1.8
COL9A3-207ENST00000467819 LPIN2Q92539 896 aa26.32■■□□□ 1.8
COL9A3-207ENST00000467819 ZDHHC15Q96MV8 337 aa26.32■■□□□ 1.8
COL9A3-207ENST00000467819 TMOD2Q9NZR1 351 aa26.32■■□□□ 1.8
COL9A3-207ENST00000467819 NOB1Q9ULX3 412 aaKnown RBP26.32■■□□□ 1.8
COL9A3-207ENST00000467819 ATG9AQ7Z3C6 839 aa26.31■■□□□ 1.8
COL9A3-207ENST00000467819 PTPN18Q99952 460 aa26.31■■□□□ 1.8
COL9A3-207ENST00000467819 SUGT1Q9Y2Z0 365 aa26.31■■□□□ 1.8
COL9A3-207ENST00000467819 TRIM17Q9Y577 477 aa26.31■■□□□ 1.8
COL9A3-207ENST00000467819 MAP3K9P80192 1104 aa26.3■■□□□ 1.8
COL9A3-207ENST00000467819 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.3■■□□□ 1.8
COL9A3-207ENST00000467819 CSADQ9Y600 493 aa26.3■■□□□ 1.8
COL9A3-207ENST00000467819 TESPA1A2RU30 521 aaPredicted RBP26.29■■□□□ 1.8
COL9A3-207ENST00000467819 APOBEC3HQ6NTF7 200 aaKnown RBP26.29■■□□□ 1.8
COL9A3-207ENST00000467819 OTOP1Q7RTM1 612 aa26.29■■□□□ 1.8
COL9A3-207ENST00000467819 MRIQ9BWK5 157 aa26.29■■□□□ 1.8
COL9A3-207ENST00000467819 CT47B1P0C2W7 299 aaPredicted RBP26.28■■□□□ 1.8
COL9A3-207ENST00000467819 ATP2B3Q16720 1220 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 WDR66Q8TBY9 1149 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 CD99L2Q8TCZ2 262 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 OTUD5Q96G74 571 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 MS4A4AQ96JQ5 239 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 API5Q9BZZ5 524 aaKnown RBP26.28■■□□□ 1.8
COL9A3-207ENST00000467819 LRRFIP2Q9Y608 721 aaKnown RBP26.28■■□□□ 1.8
COL9A3-207ENST00000467819 HTTP42858 3142 aa26.28■■□□□ 1.8
COL9A3-207ENST00000467819 HHIPL2Q6UWX4 724 aa26.27■■□□□ 1.8
COL9A3-207ENST00000467819 FAM83AQ86UY5 434 aa26.27■■□□□ 1.8
COL9A3-207ENST00000467819 ERO1AQ96HE7 468 aa26.27■■□□□ 1.8
COL9A3-207ENST00000467819 CEP126Q9P2H0 1117 aa26.27■■□□□ 1.8
COL9A3-207ENST00000467819 CCL15-CCL14A0A0B4J2E2 113 aa26.26■■□□□ 1.79
COL9A3-207ENST00000467819 CIAO1O76071 339 aa26.26■■□□□ 1.79
COL9A3-207ENST00000467819 CCL15Q16663 113 aa26.26■■□□□ 1.79
COL9A3-207ENST00000467819 BRI3BPQ8WY22 251 aa26.26■■□□□ 1.79
COL9A3-207ENST00000467819 WRNIP1Q96S55 665 aa26.26■■□□□ 1.79
COL9A3-207ENST00000467819 PA2G4Q9UQ80 394 aaKnown RBP26.26■■□□□ 1.79
COL9A3-207ENST00000467819 GTF2A2P52657 109 aa26.25■■□□□ 1.79
COL9A3-207ENST00000467819 FKBP1CQ5VVH2 108 aa26.25■■□□□ 1.79
COL9A3-207ENST00000467819 FBXO3Q9UK99 471 aa26.25■■□□□ 1.79
COL9A3-207ENST00000467819 MYH2Q9UKX2 1941 aa26.25■■□□□ 1.79
COL9A3-207ENST00000467819 MEIS3Q99687 375 aa26.24■■□□□ 1.79
COL9A3-207ENST00000467819 SNCAIPQ9Y6H5 919 aa26.24■■□□□ 1.79
COL9A3-207ENST00000467819 RPAP1Q9BWH6 1393 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-207ENST00000467819 CENPFP49454 3210 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 SPDYE5A6NIY4 337 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 PRDX5P30044 214 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 SP3Q02447 781 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 TAF1CQ15572 869 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-207ENST00000467819 DIXDC1Q155Q3 683 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 ZKSCAN4Q969J2 545 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-207ENST00000467819 HOOK2Q96ED9 719 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 HDAC5Q9UQL6 1122 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 DAGLAQ9Y4D2 1042 aa26.23■■□□□ 1.79
COL9A3-207ENST00000467819 IL15P40933 162 aaPredicted RBP26.22■■□□□ 1.79
COL9A3-207ENST00000467819 RARSP54136 660 aaKnown RBP26.22■■□□□ 1.79
COL9A3-207ENST00000467819 EFCC1Q9HA90 598 aa26.22■■□□□ 1.79
COL9A3-207ENST00000467819 GNL3LQ9NVN8 582 aaKnown RBP26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms