RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 GPR25O00155 361 aa23.99■■□□□ 1.43
COL9A3-206ENST00000466532 USP2O75604 605 aaPredicted RBP23.99■■□□□ 1.43
COL9A3-206ENST00000466532 BCAMP50895 628 aa23.99■■□□□ 1.43
COL9A3-206ENST00000466532 PUM3Q15397 648 aaKnown RBP23.99■■□□□ 1.43
COL9A3-206ENST00000466532 IFIT1P09914 478 aaKnown RBP23.98■■□□□ 1.43
COL9A3-206ENST00000466532 RFX5P48382 616 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-206ENST00000466532 NOM1Q5C9Z4 860 aaKnown RBP23.98■■□□□ 1.43
COL9A3-206ENST00000466532 CFHR5Q9BXR6 569 aa23.98■■□□□ 1.43
COL9A3-206ENST00000466532 TCP10L2B9ZVM9 353 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 EYA2O00167 538 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 ALDH1A1P00352 501 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 CT47B1P0C2W7 299 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-206ENST00000466532 FGFR2P21802 821 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 INHBEP58166 350 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 AK9Q5TCS8 1911 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 ANKRD13AQ8IZ07 590 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 KIF16BQ96L93 1317 aa23.97■■□□□ 1.43
COL9A3-206ENST00000466532 TNNI2P48788 182 aa23.96■■□□□ 1.43
COL9A3-206ENST00000466532 HDLBPQ00341 1268 aaKnown RBP23.96■■□□□ 1.43
COL9A3-206ENST00000466532 PKN2Q16513 984 aaKnown RBP23.96■■□□□ 1.43
COL9A3-206ENST00000466532 IFNL1Q8IU54 200 aa23.96■■□□□ 1.43
COL9A3-206ENST00000466532 R3HDMLQ9H3Y0 253 aa23.96■■□□□ 1.43
COL9A3-206ENST00000466532 NOB1Q9ULX3 412 aaKnown RBP23.96■■□□□ 1.43
COL9A3-206ENST00000466532 FKTNO75072 461 aa23.95■■□□□ 1.42
COL9A3-206ENST00000466532 UBTFL1P0CB47 393 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-206ENST00000466532 SOX10P56693 466 aa23.95■■□□□ 1.42
COL9A3-206ENST00000466532 TEKT1Q969V4 418 aa23.95■■□□□ 1.42
COL9A3-206ENST00000466532 TEPSINQ96N21 525 aa23.95■■□□□ 1.42
COL9A3-206ENST00000466532 TNRC18O15417 2968 aaPredicted RBP23.94■■□□□ 1.42
COL9A3-206ENST00000466532 SLC5A1P13866 664 aa23.94■■□□□ 1.42
COL9A3-206ENST00000466532 CDAN1Q8IWY9 1227 aa23.94■■□□□ 1.42
COL9A3-206ENST00000466532 TMEM39BQ9GZU3 492 aa23.94■■□□□ 1.42
COL9A3-206ENST00000466532 HPS5Q9UPZ3 1129 aa23.94■■□□□ 1.42
COL9A3-206ENST00000466532 CCER2I3L3R5 266 aa23.93■■□□□ 1.42
COL9A3-206ENST00000466532 IGF2BP3O00425 579 aaKnown RBP eCLIP23.93■■□□□ 1.42
COL9A3-206ENST00000466532 GJA5P36382 358 aa23.93■■□□□ 1.42
COL9A3-206ENST00000466532 ATG9AQ7Z3C6 839 aa23.93■■□□□ 1.42
COL9A3-206ENST00000466532 API5Q9BZZ5 524 aaKnown RBP23.93■■□□□ 1.42
COL9A3-206ENST00000466532 MAST3O60307 1309 aa23.92■■□□□ 1.42
COL9A3-206ENST00000466532 CACNB3P54284 484 aa23.92■■□□□ 1.42
COL9A3-206ENST00000466532 LPIN2Q92539 896 aa23.92■■□□□ 1.42
COL9A3-206ENST00000466532 SIL1Q9H173 461 aa23.92■■□□□ 1.42
COL9A3-206ENST00000466532 ELP3Q9H9T3 547 aa23.92■■□□□ 1.42
COL9A3-206ENST00000466532 ZDHHC15Q96MV8 337 aa23.91■■□□□ 1.42
COL9A3-206ENST00000466532 MRIQ9BWK5 157 aa23.91■■□□□ 1.42
COL9A3-206ENST00000466532 SUGT1Q9Y2Z0 365 aa23.91■■□□□ 1.42
COL9A3-206ENST00000466532 MYH2Q9UKX2 1941 aa23.9■■□□□ 1.42
COL9A3-206ENST00000466532 OPTNQ96CV9 577 aa23.9■■□□□ 1.42
COL9A3-206ENST00000466532 TMOD2Q9NZR1 351 aa23.9■■□□□ 1.42
COL9A3-206ENST00000466532 FBXO3Q9UK99 471 aa23.9■■□□□ 1.42
COL9A3-206ENST00000466532 LRRFIP2Q9Y608 721 aaKnown RBP23.9■■□□□ 1.42
COL9A3-206ENST00000466532 CIAO1O76071 339 aa23.89■■□□□ 1.41
COL9A3-206ENST00000466532 OTUD7BQ6GQQ9 843 aa23.89■■□□□ 1.41
COL9A3-206ENST00000466532 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.89■■□□□ 1.41
COL9A3-206ENST00000466532 WDR66Q8TBY9 1149 aa23.89■■□□□ 1.41
COL9A3-206ENST00000466532 HDAC5Q9UQL6 1122 aa23.89■■□□□ 1.41
COL9A3-206ENST00000466532 MAP3K9P80192 1104 aa23.88■■□□□ 1.41
COL9A3-206ENST00000466532 ATP2B3Q16720 1220 aa23.88■■□□□ 1.41
COL9A3-206ENST00000466532 APOBEC3HQ6NTF7 200 aaKnown RBP23.88■■□□□ 1.41
COL9A3-206ENST00000466532 FBXO46Q6PJ61 603 aaPredicted RBP23.88■■□□□ 1.41
COL9A3-206ENST00000466532 HHIPL2Q6UWX4 724 aa23.88■■□□□ 1.41
COL9A3-206ENST00000466532 CEP126Q9P2H0 1117 aa23.88■■□□□ 1.41
COL9A3-206ENST00000466532 RARSP54136 660 aaKnown RBP23.87■■□□□ 1.41
COL9A3-206ENST00000466532 VGLL4Q14135 290 aa23.87■■□□□ 1.41
COL9A3-206ENST00000466532 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.87■■□□□ 1.41
COL9A3-206ENST00000466532 CSADQ9Y600 493 aa23.87■■□□□ 1.41
COL9A3-206ENST00000466532 TESPA1A2RU30 521 aaPredicted RBP23.86■■□□□ 1.41
COL9A3-206ENST00000466532 FKBP1CQ5VVH2 108 aa23.86■■□□□ 1.41
COL9A3-206ENST00000466532 FAM83AQ86UY5 434 aa23.86■■□□□ 1.41
COL9A3-206ENST00000466532 CNKSR2Q8WXI2 1034 aa23.86■■□□□ 1.41
COL9A3-206ENST00000466532 MEIS3Q99687 375 aa23.86■■□□□ 1.41
COL9A3-206ENST00000466532 PTPN18Q99952 460 aa23.86■■□□□ 1.41
COL9A3-206ENST00000466532 IL15P40933 162 aaPredicted RBP23.85■■□□□ 1.41
COL9A3-206ENST00000466532 CRHR2Q13324 411 aa23.85■■□□□ 1.41
COL9A3-206ENST00000466532 GNL3LQ9NVN8 582 aaKnown RBP23.85■■□□□ 1.41
COL9A3-206ENST00000466532 PA2G4Q9UQ80 394 aaKnown RBP23.85■■□□□ 1.41
COL9A3-206ENST00000466532 DOCK2Q92608 1830 aa23.84■■□□□ 1.41
COL9A3-206ENST00000466532 PDE4DIPQ5VU43 2346 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 RPAP1Q9BWH6 1393 aaPredicted RBP23.83■■□□□ 1.41
COL9A3-206ENST00000466532 ARHGAP45Q92619 1136 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 HOOK2Q96ED9 719 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 OTUD5Q96G74 571 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 MS4A4AQ96JQ5 239 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 COPRSQ9NQ92 184 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 TRIM17Q9Y577 477 aa23.83■■□□□ 1.41
COL9A3-206ENST00000466532 PRDX5P30044 214 aa23.82■■□□□ 1.4
COL9A3-206ENST00000466532 DIXDC1Q155Q3 683 aa23.82■■□□□ 1.4
COL9A3-206ENST00000466532 INTS3Q68E01 1043 aaKnown RBP23.82■■□□□ 1.4
COL9A3-206ENST00000466532 ERO1AQ96HE7 468 aa23.82■■□□□ 1.4
COL9A3-206ENST00000466532 WRNIP1Q96S55 665 aa23.82■■□□□ 1.4
COL9A3-206ENST00000466532 DAGLAQ9Y4D2 1042 aa23.82■■□□□ 1.4
COL9A3-206ENST00000466532 CCL15-CCL14A0A0B4J2E2 113 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 LDHBP07195 334 aaKnown RBP23.81■■□□□ 1.4
COL9A3-206ENST00000466532 PHKA1P46020 1223 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 GTF2A2P52657 109 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 CCL15Q16663 113 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 OTOP1Q7RTM1 612 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 BRI3BPQ8WY22 251 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 DENND2AQ9ULE3 1009 aa23.81■■□□□ 1.4
COL9A3-206ENST00000466532 SNCAIPQ9Y6H5 919 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms