RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 PRKG1Q13976 671 aa27.08■■□□□ 1.93
LIME1-203ENST00000465591 TTLL12Q14166 644 aaPredicted RBP27.08■■□□□ 1.93
LIME1-203ENST00000465591 DZIP1LQ8IYY4 767 aaKnown RBP27.08■■□□□ 1.93
LIME1-203ENST00000465591 BEGAINQ9BUH8 593 aa27.08■■□□□ 1.93
LIME1-203ENST00000465591 TDRD3Q9H7E2 651 aaKnown RBP27.08■■□□□ 1.93
LIME1-203ENST00000465591 NF2P35240 595 aa27.07■■□□□ 1.92
LIME1-203ENST00000465591 SPDYE2Q495Y8 402 aa27.07■■□□□ 1.92
LIME1-203ENST00000465591 ZNF70Q9UC06 446 aaPredicted RBP27.07■■□□□ 1.92
LIME1-203ENST00000465591 PHKA1P46020 1223 aa27.06■■□□□ 1.92
LIME1-203ENST00000465591 TFCP2Q12800 502 aa27.05■■□□□ 1.92
LIME1-203ENST00000465591 AKAP11Q9UKA4 1901 aa27.05■■□□□ 1.92
LIME1-203ENST00000465591 CASP8AP2Q9UKL3 1982 aa27.05■■□□□ 1.92
LIME1-203ENST00000465591 TIMM10P62072 90 aa27.04■■□□□ 1.92
LIME1-203ENST00000465591 RASA3Q14644 834 aa27.04■■□□□ 1.92
LIME1-203ENST00000465591 NBPF12Q5TAG4 269 aaPredicted RBP27.04■■□□□ 1.92
LIME1-203ENST00000465591 FTSJ3Q8IY81 847 aaKnown RBP27.04■■□□□ 1.92
LIME1-203ENST00000465591 C1orf115Q9H7X2 142 aa27.04■■□□□ 1.92
LIME1-203ENST00000465591 PPP2R3BQ9Y5P8 575 aa27.04■■□□□ 1.92
LIME1-203ENST00000465591 HDLBPQ00341 1268 aaKnown RBP27.03■■□□□ 1.92
LIME1-203ENST00000465591 CDAN1Q8IWY9 1227 aa27.03■■□□□ 1.92
LIME1-203ENST00000465591 CSRNP1Q96S65 589 aa27.03■■□□□ 1.92
LIME1-203ENST00000465591 ANGEL1Q9UNK9 670 aaKnown RBP27.03■■□□□ 1.92
LIME1-203ENST00000465591 LDLRAD1Q5T700 205 aa27.02■■□□□ 1.92
LIME1-203ENST00000465591 ITPRIPQ8IWB1 547 aa27.02■■□□□ 1.92
LIME1-203ENST00000465591 WDR66Q8TBY9 1149 aa27.02■■□□□ 1.92
LIME1-203ENST00000465591 A0A1B0GUL7 405 aa27.01■■□□□ 1.91
LIME1-203ENST00000465591 ZBTB7BO15156 539 aaPredicted RBP27.01■■□□□ 1.91
LIME1-203ENST00000465591 CCDC102BQ68D86 513 aa27.01■■□□□ 1.91
LIME1-203ENST00000465591 ARMC9Q7Z3E5 817 aa27.01■■□□□ 1.91
LIME1-203ENST00000465591 TEKT1Q969V4 418 aa27.01■■□□□ 1.91
LIME1-203ENST00000465591 SUGT1Q9Y2Z0 365 aa27.01■■□□□ 1.91
LIME1-203ENST00000465591 TCP10L2B9ZVM9 353 aa27■■□□□ 1.91
LIME1-203ENST00000465591 CA12O43570 354 aa27■■□□□ 1.91
LIME1-203ENST00000465591 CACNB3P54284 484 aa27■■□□□ 1.91
LIME1-203ENST00000465591 APOBEC3HQ6NTF7 200 aaKnown RBP27■■□□□ 1.91
LIME1-203ENST00000465591 PANK1Q8TE04 598 aa27■■□□□ 1.91
LIME1-203ENST00000465591 ZDHHC15Q96MV8 337 aa27■■□□□ 1.91
LIME1-203ENST00000465591 PRDX5P30044 214 aa26.99■■□□□ 1.91
LIME1-203ENST00000465591 POLA2Q14181 598 aa26.99■■□□□ 1.91
LIME1-203ENST00000465591 XAGE2Q96GT9 111 aa26.99■■□□□ 1.91
LIME1-203ENST00000465591 TEPSINQ96N21 525 aa26.99■■□□□ 1.91
LIME1-203ENST00000465591 MRIQ9BWK5 157 aa26.99■■□□□ 1.91
LIME1-203ENST00000465591 GNL3LQ9NVN8 582 aaKnown RBP26.99■■□□□ 1.91
LIME1-203ENST00000465591 OTOFQ9HC10 1997 aa26.98■■□□□ 1.91
LIME1-203ENST00000465591 MAP3K11Q16584 847 aa26.98■■□□□ 1.91
LIME1-203ENST00000465591 TMEM39BQ9GZU3 492 aa26.98■■□□□ 1.91
LIME1-203ENST00000465591 MAST3O60307 1309 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 ATP8B2P98198 1209 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 MKRN3Q13064 507 aaKnown RBP26.97■■□□□ 1.91
LIME1-203ENST00000465591 TNFAIP1Q13829 316 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 RASGRF1Q13972 1273 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 DIXDC1Q155Q3 683 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 SUPT20HL1Q3ZLR7 823 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 SSH3Q8TE77 659 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 CLMNQ96JQ2 1002 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 RNF186Q9NXI6 227 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 DENND2AQ9ULE3 1009 aa26.97■■□□□ 1.91
LIME1-203ENST00000465591 SEMA3EO15041 775 aa26.96■■□□□ 1.91
LIME1-203ENST00000465591 ZBTB22O15209 634 aa26.96■■□□□ 1.91
LIME1-203ENST00000465591 USP2O75604 605 aaPredicted RBP26.96■■□□□ 1.91
LIME1-203ENST00000465591 HHIPL2Q6UWX4 724 aa26.96■■□□□ 1.91
LIME1-203ENST00000465591 AKAP2Q9Y2D5 859 aa26.96■■□□□ 1.91
LIME1-203ENST00000465591 SALL1Q9NSC2 1324 aa26.95■■□□□ 1.91
LIME1-203ENST00000465591 MYH2Q9UKX2 1941 aa26.95■■□□□ 1.9
LIME1-203ENST00000465591 G3BP1Q13283 466 aaKnown RBP eCLIP26.95■■□□□ 1.9
LIME1-203ENST00000465591 PPP1R12BO60237 982 aaPredicted RBP26.94■■□□□ 1.9
LIME1-203ENST00000465591 TRPA1O75762 1119 aa26.94■■□□□ 1.9
LIME1-203ENST00000465591 CAPN15O75808 1086 aa26.94■■□□□ 1.9
LIME1-203ENST00000465591 NEUROD6Q96NK8 337 aa26.94■■□□□ 1.9
LIME1-203ENST00000465591 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.94■■□□□ 1.9
LIME1-203ENST00000465591 DAGLAQ9Y4D2 1042 aa26.94■■□□□ 1.9
LIME1-203ENST00000465591 SAGE1Q9NXZ1 904 aa26.93■■□□□ 1.9
LIME1-203ENST00000465591 LDHBP07195 334 aaKnown RBP26.92■■□□□ 1.9
LIME1-203ENST00000465591 MVPQ14764 893 aaKnown RBP26.92■■□□□ 1.9
LIME1-203ENST00000465591 SPRYD7Q5W111 196 aa26.92■■□□□ 1.9
LIME1-203ENST00000465591 TNNI2P48788 182 aa26.91■■□□□ 1.9
LIME1-203ENST00000465591 LAMB1P07942 1786 aa26.91■■□□□ 1.9
LIME1-203ENST00000465591 PI16Q6UXB8 463 aa26.9■■□□□ 1.9
LIME1-203ENST00000465591 REM2Q8IYK8 340 aaPredicted RBP26.9■■□□□ 1.9
LIME1-203ENST00000465591 SLC10A4Q96EP9 437 aa26.9■■□□□ 1.9
LIME1-203ENST00000465591 PDS5AQ29RF7 1337 aaKnown RBP26.9■■□□□ 1.9
LIME1-203ENST00000465591 SURF6O75683 361 aaKnown RBP26.89■■□□□ 1.9
LIME1-203ENST00000465591 IREB2P48200 963 aaKnown RBP26.89■■□□□ 1.9
LIME1-203ENST00000465591 FKBP1CQ5VVH2 108 aa26.89■■□□□ 1.9
LIME1-203ENST00000465591 CDC42EP5Q6NZY7 148 aa26.89■■□□□ 1.9
LIME1-203ENST00000465591 CEP85Q6P2H3 762 aa26.89■■□□□ 1.9
LIME1-203ENST00000465591 RCAN3Q9UKA8 241 aa26.89■■□□□ 1.9
LIME1-203ENST00000465591 GJA5P36382 358 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 TM4SF4P48230 202 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 FAM83AQ86UY5 434 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 WNK4Q96J92 1243 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 TMOD2Q9NZR1 351 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 HMG20BQ9P0W2 317 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 ABCF2Q9UG63 623 aa26.88■■□□□ 1.89
LIME1-203ENST00000465591 NOP58Q9Y2X3 529 aaKnown RBP26.88■■□□□ 1.89
LIME1-203ENST00000465591 NFIAQ12857 509 aa26.87■■□□□ 1.89
LIME1-203ENST00000465591 AK9Q5TCS8 1911 aa26.86■■□□□ 1.89
LIME1-203ENST00000465591 ARID4AP29374 1257 aaPredicted RBP26.86■■□□□ 1.89
LIME1-203ENST00000465591 OS9Q13438 667 aaPredicted RBP26.86■■□□□ 1.89
LIME1-203ENST00000465591 TNNI3KQ59H18 835 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms