RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MRPL50Q8N5N7 158 aaKnown RBP28.5■■■□□ 2.15
USP4-208ENST00000464168 IQSEC3Q9UPP2 1182 aaPredicted RBP28.5■■■□□ 2.15
USP4-208ENST00000464168 TRIM17Q9Y577 477 aa28.5■■■□□ 2.15
USP4-208ENST00000464168 TCP10L2B9ZVM9 353 aa28.49■■■□□ 2.15
USP4-208ENST00000464168 CRHR2Q13324 411 aa28.49■■■□□ 2.15
USP4-208ENST00000464168 PRPF38BQ5VTL8 546 aaKnown RBP28.49■■■□□ 2.15
USP4-208ENST00000464168 OTUD7BQ6GQQ9 843 aa28.49■■■□□ 2.15
USP4-208ENST00000464168 ELP3Q9H9T3 547 aa28.49■■■□□ 2.15
USP4-208ENST00000464168 METTL24Q5JXM2 366 aa28.48■■■□□ 2.15
USP4-208ENST00000464168 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.48■■■□□ 2.15
USP4-208ENST00000464168 VPS37DQ86XT2 251 aa28.48■■■□□ 2.15
USP4-208ENST00000464168 VGLL2Q8N8G2 317 aa28.48■■■□□ 2.15
USP4-208ENST00000464168 OPTNQ96CV9 577 aa28.48■■■□□ 2.15
USP4-208ENST00000464168 TMEM39BQ9GZU3 492 aa28.48■■■□□ 2.15
USP4-208ENST00000464168 CHAF1AQ13111 956 aaPredicted RBP28.47■■■□□ 2.15
USP4-208ENST00000464168 MS4A4AQ96JQ5 239 aa28.47■■■□□ 2.15
USP4-208ENST00000464168 LAMB1P07942 1786 aa28.47■■■□□ 2.15
USP4-208ENST00000464168 CENPFP49454 3210 aa28.46■■■□□ 2.15
USP4-208ENST00000464168 PDE8BO95263 885 aa28.46■■■□□ 2.15
USP4-208ENST00000464168 ZEB1P37275 1124 aaPredicted RBP28.46■■■□□ 2.15
USP4-208ENST00000464168 CAVIN4Q5BKX8 364 aa28.46■■■□□ 2.15
USP4-208ENST00000464168 HDLBPQ00341 1268 aaKnown RBP28.45■■■□□ 2.14
USP4-208ENST00000464168 KLHDC4Q8TBB5 520 aa28.45■■■□□ 2.14
USP4-208ENST00000464168 CNKSR2Q8WXI2 1034 aa28.45■■■□□ 2.14
USP4-208ENST00000464168 ERO1AQ96HE7 468 aa28.45■■■□□ 2.14
USP4-208ENST00000464168 FRAT2O75474 233 aaPredicted RBP28.44■■■□□ 2.14
USP4-208ENST00000464168 TNNI2P48788 182 aa28.44■■■□□ 2.14
USP4-208ENST00000464168 CD99L2Q8TCZ2 262 aa28.44■■■□□ 2.14
USP4-208ENST00000464168 TBC1D22AQ8WUA7 517 aa28.44■■■□□ 2.14
USP4-208ENST00000464168 USP44Q9H0E7 712 aa28.44■■■□□ 2.14
USP4-208ENST00000464168 PTPRCP08575 1304 aa28.43■■■□□ 2.14
USP4-208ENST00000464168 BCAMP50895 628 aa28.43■■■□□ 2.14
USP4-208ENST00000464168 MAP3K9P80192 1104 aa28.43■■■□□ 2.14
USP4-208ENST00000464168 VGLL4Q14135 290 aa28.43■■■□□ 2.14
USP4-208ENST00000464168 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.43■■■□□ 2.14
USP4-208ENST00000464168 CAP1Q01518 475 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 BRI3BPQ8WY22 251 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 SSH1Q8WYL5 1049 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 TEKT1Q969V4 418 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 MRIQ9BWK5 157 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 PTPN22Q9Y2R2 807 aa28.42■■■□□ 2.14
USP4-208ENST00000464168 MKI67P46013 3256 aaKnown RBP28.42■■■□□ 2.14
USP4-208ENST00000464168 ARAP2Q8WZ64 1704 aa28.41■■■□□ 2.14
USP4-208ENST00000464168 CACNB3P54284 484 aa28.41■■■□□ 2.14
USP4-208ENST00000464168 SP3Q02447 781 aa28.41■■■□□ 2.14
USP4-208ENST00000464168 OTOFQ9HC10 1997 aa28.41■■■□□ 2.14
USP4-208ENST00000464168 FGFR2P21802 821 aa28.4■■■□□ 2.14
USP4-208ENST00000464168 INTS3Q68E01 1043 aaKnown RBP28.4■■■□□ 2.14
USP4-208ENST00000464168 ZDHHC15Q96MV8 337 aa28.4■■■□□ 2.14
USP4-208ENST00000464168 EFCC1Q9HA90 598 aa28.4■■■□□ 2.14
USP4-208ENST00000464168 GTF2A2P52657 109 aa28.39■■■□□ 2.14
USP4-208ENST00000464168 CSADQ9Y600 493 aa28.39■■■□□ 2.14
USP4-208ENST00000464168 PUM3Q15397 648 aaKnown RBP28.38■■■□□ 2.13
USP4-208ENST00000464168 APOBEC3HQ6NTF7 200 aaKnown RBP28.38■■■□□ 2.13
USP4-208ENST00000464168 KIF16BQ96L93 1317 aa28.38■■■□□ 2.13
USP4-208ENST00000464168 KIAA0100Q14667 2235 aaKnown RBP28.38■■■□□ 2.13
USP4-208ENST00000464168 CCL15-CCL14A0A0B4J2E2 113 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 POTEFA5A3E0 1075 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 E9PSI1 815 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 CCL15Q16663 113 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 OTUD5Q96G74 571 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 SUGT1Q9Y2Z0 365 aa28.37■■■□□ 2.13
USP4-208ENST00000464168 IFIT1P09914 478 aaKnown RBP28.36■■■□□ 2.13
USP4-208ENST00000464168 RFX5P48382 616 aaPredicted RBP28.36■■■□□ 2.13
USP4-208ENST00000464168 FKBP1CQ5VVH2 108 aa28.36■■■□□ 2.13
USP4-208ENST00000464168 FAM83AQ86UY5 434 aa28.36■■■□□ 2.13
USP4-208ENST00000464168 SPDYE5A6NIY4 337 aa28.35■■■□□ 2.13
USP4-208ENST00000464168 TAF1CQ15572 869 aaPredicted RBP28.35■■■□□ 2.13
USP4-208ENST00000464168 FAM43AQ8N2R8 423 aa28.35■■■□□ 2.13
USP4-208ENST00000464168 ARMC5Q96C12 935 aa28.35■■■□□ 2.13
USP4-208ENST00000464168 ZFYVE28Q9HCC9 887 aa28.35■■■□□ 2.13
USP4-208ENST00000464168 SNCAIPQ9Y6H5 919 aa28.35■■■□□ 2.13
USP4-208ENST00000464168 BRCA2P51587 3418 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 EYA2O00167 538 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 SLFN5Q08AF3 891 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 HHIPL2Q6UWX4 724 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 TMOD2Q9NZR1 351 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 MAST3O60307 1309 aa28.34■■■□□ 2.13
USP4-208ENST00000464168 ZKSCAN4Q969J2 545 aaPredicted RBP28.33■■■□□ 2.13
USP4-208ENST00000464168 WRNIP1Q96S55 665 aa28.33■■■□□ 2.13
USP4-208ENST00000464168 PCDH10Q9P2E7 1040 aa28.33■■■□□ 2.13
USP4-208ENST00000464168 ERO1BQ86YB8 467 aa28.32■■■□□ 2.12
USP4-208ENST00000464168 LPIN2Q92539 896 aa28.32■■■□□ 2.12
USP4-208ENST00000464168 SLC5A1P13866 664 aa28.31■■■□□ 2.12
USP4-208ENST00000464168 ATG9AQ7Z3C6 839 aa28.31■■■□□ 2.12
USP4-208ENST00000464168 HOOK2Q96ED9 719 aa28.31■■■□□ 2.12
USP4-208ENST00000464168 CETPP11597 493 aa28.3■■■□□ 2.12
USP4-208ENST00000464168 WDR66Q8TBY9 1149 aa28.3■■■□□ 2.12
USP4-208ENST00000464168 IRF6O14896 467 aa28.29■■■□□ 2.12
USP4-208ENST00000464168 ALDH1L2Q3SY69 923 aa28.29■■■□□ 2.12
USP4-208ENST00000464168 BTBD19C9JJ37 291 aa28.28■■■□□ 2.12
USP4-208ENST00000464168 ARHGEF6Q15052 776 aa28.28■■■□□ 2.12
USP4-208ENST00000464168 CDCA7LQ96GN5 454 aa28.28■■■□□ 2.12
USP4-208ENST00000464168 RPAP1Q9BWH6 1393 aaPredicted RBP28.27■■■□□ 2.12
USP4-208ENST00000464168 EN2P19622 333 aaPredicted RBP28.27■■■□□ 2.12
USP4-208ENST00000464168 PPIL2Q13356 520 aa28.27■■■□□ 2.12
USP4-208ENST00000464168 SNAPC2Q13487 334 aa28.27■■■□□ 2.12
USP4-208ENST00000464168 DCAF15Q66K64 600 aa28.27■■■□□ 2.12
USP4-208ENST00000464168 MIGA2Q7L4E1 593 aa28.27■■■□□ 2.12
USP4-208ENST00000464168 ZNF333Q96JL9 665 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms