RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 HDLBPQ00341 1268 aaKnown RBP23.53■■□□□ 1.36
SF3A1-205ENST00000463818 TNFAIP1Q13829 316 aa23.53■■□□□ 1.36
SF3A1-205ENST00000463818 MEIS3Q99687 375 aa23.53■■□□□ 1.36
SF3A1-205ENST00000463818 FBXO3Q9UK99 471 aa23.53■■□□□ 1.36
SF3A1-205ENST00000463818 USP2O75604 605 aaPredicted RBP23.52■■□□□ 1.36
SF3A1-205ENST00000463818 CIAO1O76071 339 aa23.52■■□□□ 1.36
SF3A1-205ENST00000463818 TBC1D8O95759 1140 aa23.52■■□□□ 1.36
SF3A1-205ENST00000463818 INTS3Q68E01 1043 aaKnown RBP23.52■■□□□ 1.36
SF3A1-205ENST00000463818 CLMNQ96JQ2 1002 aa23.52■■□□□ 1.36
SF3A1-205ENST00000463818 MRIQ9BWK5 157 aa23.52■■□□□ 1.36
SF3A1-205ENST00000463818 CEP126Q9P2H0 1117 aa23.52■■□□□ 1.36
SF3A1-205ENST00000463818 TCP10L2B9ZVM9 353 aa23.51■■□□□ 1.35
SF3A1-205ENST00000463818 SREBF2Q12772 1141 aa23.51■■□□□ 1.35
SF3A1-205ENST00000463818 PA2G4Q9UQ80 394 aaKnown RBP23.51■■□□□ 1.35
SF3A1-205ENST00000463818 SSC5DA1L4H1 1573 aa23.5■■□□□ 1.35
SF3A1-205ENST00000463818 UNCXA6NJT0 531 aa23.5■■□□□ 1.35
SF3A1-205ENST00000463818 IPO8O15397 1037 aaKnown RBP23.5■■□□□ 1.35
SF3A1-205ENST00000463818 IREB2P48200 963 aaKnown RBP23.5■■□□□ 1.35
SF3A1-205ENST00000463818 MIER1Q8N108 512 aa23.5■■□□□ 1.35
SF3A1-205ENST00000463818 IL15P40933 162 aaPredicted RBP23.49■■□□□ 1.35
SF3A1-205ENST00000463818 TEKT1Q969V4 418 aa23.49■■□□□ 1.35
SF3A1-205ENST00000463818 SUGT1Q9Y2Z0 365 aa23.49■■□□□ 1.35
SF3A1-205ENST00000463818 BCAR3O75815 825 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 GNAI3P08754 354 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 TNNI2P48788 182 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 ATP2B3Q16720 1220 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 WDR66Q8TBY9 1149 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 TEPSINQ96N21 525 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 TMEM39BQ9GZU3 492 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 COPRSQ9NQ92 184 aa23.48■■□□□ 1.35
SF3A1-205ENST00000463818 CDAN1Q8IWY9 1227 aa23.47■■□□□ 1.35
SF3A1-205ENST00000463818 FRAT1Q92837 279 aaPredicted RBP23.47■■□□□ 1.35
SF3A1-205ENST00000463818 WNK4Q96J92 1243 aa23.47■■□□□ 1.35
SF3A1-205ENST00000463818 ZDHHC15Q96MV8 337 aa23.47■■□□□ 1.35
SF3A1-205ENST00000463818 MANSC4A6NHS7 340 aaPredicted RBP23.46■■□□□ 1.35
SF3A1-205ENST00000463818 ZBTB48P10074 688 aaPredicted RBP23.46■■□□□ 1.35
SF3A1-205ENST00000463818 INHBEP58166 350 aa23.46■■□□□ 1.35
SF3A1-205ENST00000463818 APOBEC3HQ6NTF7 200 aaKnown RBP23.46■■□□□ 1.35
SF3A1-205ENST00000463818 ANKRD13AQ8IZ07 590 aa23.46■■□□□ 1.35
SF3A1-205ENST00000463818 GNL3LQ9NVN8 582 aaKnown RBP23.46■■□□□ 1.35
SF3A1-205ENST00000463818 TNNQ9UQP3 1299 aa23.46■■□□□ 1.35
SF3A1-205ENST00000463818 MAST3O60307 1309 aa23.45■■□□□ 1.34
SF3A1-205ENST00000463818 TRIM27P14373 513 aa23.45■■□□□ 1.34
SF3A1-205ENST00000463818 CACNB3P54284 484 aa23.45■■□□□ 1.34
SF3A1-205ENST00000463818 DIEXFQ68CQ4 756 aaKnown RBP23.45■■□□□ 1.34
SF3A1-205ENST00000463818 HHIPL2Q6UWX4 724 aa23.45■■□□□ 1.34
SF3A1-205ENST00000463818 ATF7IPQ6VMQ6 1270 aa23.45■■□□□ 1.34
SF3A1-205ENST00000463818 CTU1Q7Z7A3 348 aaKnown RBP23.45■■□□□ 1.34
SF3A1-205ENST00000463818 ZNF296Q8WUU4 475 aaPredicted RBP23.45■■□□□ 1.34
SF3A1-205ENST00000463818 AKAP11Q9UKA4 1901 aa23.44■■□□□ 1.34
SF3A1-205ENST00000463818 GPR25O00155 361 aa23.44■■□□□ 1.34
SF3A1-205ENST00000463818 R3HDMLQ9H3Y0 253 aa23.44■■□□□ 1.34
SF3A1-205ENST00000463818 SRGAP3O43295 1099 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 ALDH1A1P00352 501 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 GJA5P36382 358 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 HNRNPUQ00839 825 aaKnown RBP eCLIP23.43■■□□□ 1.34
SF3A1-205ENST00000463818 IFNL1Q8IU54 200 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 CFHR5Q9BXR6 569 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 TMOD2Q9NZR1 351 aa23.43■■□□□ 1.34
SF3A1-205ENST00000463818 PHKA1P46020 1223 aa23.42■■□□□ 1.34
SF3A1-205ENST00000463818 MAP3K9P80192 1104 aa23.42■■□□□ 1.34
SF3A1-205ENST00000463818 NOM1Q5C9Z4 860 aaKnown RBP23.42■■□□□ 1.34
SF3A1-205ENST00000463818 CLUAP1Q96AJ1 413 aa23.42■■□□□ 1.34
SF3A1-205ENST00000463818 ELP3Q9H9T3 547 aa23.42■■□□□ 1.34
SF3A1-205ENST00000463818 ADORA1P30542 326 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 RGS19P49795 217 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 TIMM10P62072 90 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 MTX1Q13505 466 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 FKBP1CQ5VVH2 108 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.41■■□□□ 1.34
SF3A1-205ENST00000463818 DENND2AQ9ULE3 1009 aa23.41■■□□□ 1.34
SF3A1-205ENST00000463818 FAM83AQ86UY5 434 aa23.4■■□□□ 1.34
SF3A1-205ENST00000463818 ECM29Q5VYK3 1845 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 IGF2BP3O00425 579 aaKnown RBP eCLIP23.39■■□□□ 1.33
SF3A1-205ENST00000463818 SEMA3EO15041 775 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 GNAI2P04899 355 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 LDHBP07195 334 aaKnown RBP23.39■■□□□ 1.33
SF3A1-205ENST00000463818 PRDX5P30044 214 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 TFCP2Q12800 502 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 DIXDC1Q155Q3 683 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 CCDC102BQ68D86 513 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 OPTNQ96CV9 577 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 DAGLAQ9Y4D2 1042 aa23.39■■□□□ 1.33
SF3A1-205ENST00000463818 FKTNO75072 461 aa23.38■■□□□ 1.33
SF3A1-205ENST00000463818 ZKSCAN2Q63HK3 967 aa23.38■■□□□ 1.33
SF3A1-205ENST00000463818 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.38■■□□□ 1.33
SF3A1-205ENST00000463818 AKAP2Q9Y2D5 859 aa23.38■■□□□ 1.33
SF3A1-205ENST00000463818 VGLL4Q14135 290 aa23.37■■□□□ 1.33
SF3A1-205ENST00000463818 PKN2Q16513 984 aaKnown RBP23.37■■□□□ 1.33
SF3A1-205ENST00000463818 OTUD7BQ6GQQ9 843 aa23.37■■□□□ 1.33
SF3A1-205ENST00000463818 TMEM57Q8N5G2 664 aa23.37■■□□□ 1.33
SF3A1-205ENST00000463818 CNKSR2Q8WXI2 1034 aa23.37■■□□□ 1.33
SF3A1-205ENST00000463818 PTPN18Q99952 460 aa23.37■■□□□ 1.33
SF3A1-205ENST00000463818 SALL1Q9NSC2 1324 aa23.36■■□□□ 1.33
SF3A1-205ENST00000463818 TESPA1A2RU30 521 aaPredicted RBP23.36■■□□□ 1.33
SF3A1-205ENST00000463818 ZBTB22O15209 634 aa23.36■■□□□ 1.33
SF3A1-205ENST00000463818 CDC42EP5Q6NZY7 148 aa23.36■■□□□ 1.33
SF3A1-205ENST00000463818 HOOK2Q96ED9 719 aa23.36■■□□□ 1.33
SF3A1-205ENST00000463818 XAGE2Q96GT9 111 aa23.36■■□□□ 1.33
SF3A1-205ENST00000463818 CSADQ9Y600 493 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms