RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 FAM43AQ8N2R8 423 aa18.38■□□□□ 0.53
SMC1A-204ENST00000463684 TDRD7Q8NHU6 1098 aaKnown RBP18.38■□□□□ 0.53
SMC1A-204ENST00000463684 TEPSINQ96N21 525 aa18.38■□□□□ 0.53
SMC1A-204ENST00000463684 BRCA2P51587 3418 aa18.37■□□□□ 0.53
SMC1A-204ENST00000463684 HIBADHP31937 336 aaKnown RBP18.37■□□□□ 0.53
SMC1A-204ENST00000463684 CCDC27Q2M243 656 aa18.37■□□□□ 0.53
SMC1A-204ENST00000463684 WWC1Q8IX03 1113 aa18.37■□□□□ 0.53
SMC1A-204ENST00000463684 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.37■□□□□ 0.53
SMC1A-204ENST00000463684 ZNF594Q96JF6 807 aaPredicted RBP18.37■□□□□ 0.53
SMC1A-204ENST00000463684 TMEM39BQ9GZU3 492 aa18.37■□□□□ 0.53
SMC1A-204ENST00000463684 LAMB1P07942 1786 aa18.37■□□□□ 0.53
SMC1A-204ENST00000463684 H0YGN5 161 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 TLR2O60603 784 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 GNRH1P01148 92 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 CETPP11597 493 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 CRKP46108 304 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 UBE4AQ14139 1066 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 ECM29Q5VYK3 1845 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 SH3TC2Q8TF17 1288 aa18.36■□□□□ 0.53
SMC1A-204ENST00000463684 GYG1P46976 350 aa18.35■□□□□ 0.53
SMC1A-204ENST00000463684 CDAN1Q8IWY9 1227 aa18.35■□□□□ 0.53
SMC1A-204ENST00000463684 ZCCHC17Q9NP64 241 aaKnown RBP18.35■□□□□ 0.53
SMC1A-204ENST00000463684 IL16Q14005 1332 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 SPDYE5A6NIY4 337 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 PRMT2P55345 433 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 LACTBP83111 547 aaPredicted RBP18.34■□□□□ 0.53
SMC1A-204ENST00000463684 BEND3Q5T5X7 828 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 ERO1BQ86YB8 467 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 HOOK2Q96ED9 719 aa18.34■□□□□ 0.53
SMC1A-204ENST00000463684 FAM84BQ96KN1 310 aaPredicted RBP18.34■□□□□ 0.53
SMC1A-204ENST00000463684 KIAA0100Q14667 2235 aaKnown RBP18.33■□□□□ 0.53
SMC1A-204ENST00000463684 F6X3S4 739 aa18.33■□□□□ 0.52
SMC1A-204ENST00000463684 SNAPC2Q13487 334 aa18.33■□□□□ 0.52
SMC1A-204ENST00000463684 EPHA10Q5JZY3 1008 aa18.33■□□□□ 0.52
SMC1A-204ENST00000463684 VPS37DQ86XT2 251 aa18.33■□□□□ 0.52
SMC1A-204ENST00000463684 ARHGAP39Q9C0H5 1083 aa18.33■□□□□ 0.52
SMC1A-204ENST00000463684 C9orf78Q9NZ63 289 aaPredicted RBP18.33■□□□□ 0.52
SMC1A-204ENST00000463684 BTBD19C9JJ37 291 aa18.32■□□□□ 0.52
SMC1A-204ENST00000463684 GRM8O00222 908 aa18.32■□□□□ 0.52
SMC1A-204ENST00000463684 FRAT2O75474 233 aaPredicted RBP18.32■□□□□ 0.52
SMC1A-204ENST00000463684 DPF3Q92784 378 aa18.32■□□□□ 0.52
SMC1A-204ENST00000463684 WRNIP1Q96S55 665 aa18.32■□□□□ 0.52
SMC1A-204ENST00000463684 TMOD2Q9NZR1 351 aa18.32■□□□□ 0.52
SMC1A-204ENST00000463684 VAMP4O75379 141 aa18.31■□□□□ 0.52
SMC1A-204ENST00000463684 HDLBPQ00341 1268 aaKnown RBP18.31■□□□□ 0.52
SMC1A-204ENST00000463684 CHRDL2Q6WN34 429 aa18.31■□□□□ 0.52
SMC1A-204ENST00000463684 TEKT1Q969V4 418 aa18.31■□□□□ 0.52
SMC1A-204ENST00000463684 SNCAIPQ9Y6H5 919 aa18.31■□□□□ 0.52
SMC1A-204ENST00000463684 IRF6O14896 467 aa18.3■□□□□ 0.52
SMC1A-204ENST00000463684 HOXD10P28358 340 aa18.3■□□□□ 0.52
SMC1A-204ENST00000463684 CHAF1AQ13111 956 aaPredicted RBP18.3■□□□□ 0.52
SMC1A-204ENST00000463684 NKX2-3Q8TAU0 364 aa18.3■□□□□ 0.52
SMC1A-204ENST00000463684 TBC1D22AQ8WUA7 517 aa18.3■□□□□ 0.52
SMC1A-204ENST00000463684 ZKSCAN4Q969J2 545 aaPredicted RBP18.3■□□□□ 0.52
SMC1A-204ENST00000463684 ECM2O94769 699 aaPredicted RBP18.29■□□□□ 0.52
SMC1A-204ENST00000463684 CACNB3P54284 484 aa18.29■□□□□ 0.52
SMC1A-204ENST00000463684 PPIL2Q13356 520 aa18.29■□□□□ 0.52
SMC1A-204ENST00000463684 CAVIN4Q5BKX8 364 aa18.29■□□□□ 0.52
SMC1A-204ENST00000463684 DCAF15Q66K64 600 aa18.29■□□□□ 0.52
SMC1A-204ENST00000463684 FAM83AQ86UY5 434 aa18.29■□□□□ 0.52
SMC1A-204ENST00000463684 IQSEC3Q9UPP2 1182 aaPredicted RBP18.29■□□□□ 0.52
SMC1A-204ENST00000463684 MROH5Q6ZUA9 1318 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 FANCIQ9NVI1 1328 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 OTOFQ9HC10 1997 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 PSMC4P43686 418 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 GRIK5Q16478 980 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 C17orf99Q6UX52 265 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 FBXO33Q7Z6M2 555 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 RAET1EQ8TD07 263 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 MRIQ9BWK5 157 aa18.28■□□□□ 0.52
SMC1A-204ENST00000463684 PUS3Q9BZE2 481 aaKnown RBP18.28■□□□□ 0.52
SMC1A-204ENST00000463684 FMNL1O95466 1100 aaPredicted RBP18.27■□□□□ 0.52
SMC1A-204ENST00000463684 PPATQ06203 517 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 EXOSC9Q06265 439 aaKnown RBP18.27■□□□□ 0.52
SMC1A-204ENST00000463684 MTFR1Q15390 333 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 NCBP3Q53F19 620 aaKnown RBP18.27■□□□□ 0.52
SMC1A-204ENST00000463684 FKBP1CQ5VVH2 108 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 ZDHHC15Q96MV8 337 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 HTATIP2Q9BUP3 242 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 SRRDQ9UH36 339 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 CPA4Q9UI42 421 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 RIPOR2Q9Y4F9 1068 aa18.27■□□□□ 0.52
SMC1A-204ENST00000463684 ALDH1L1O75891 902 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 GRK4P32298 578 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 SLC4A10Q6U841 1118 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 ANKRD23Q86SG2 305 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.26■□□□□ 0.51
SMC1A-204ENST00000463684 TRIM47Q96LD4 638 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 ZNF341Q9BYN7 854 aa18.26■□□□□ 0.51
SMC1A-204ENST00000463684 RBM27Q9P2N5 1060 aaKnown RBP18.26■□□□□ 0.51
SMC1A-204ENST00000463684 BIN2Q9UBW5 565 aaPredicted RBP18.26■□□□□ 0.51
SMC1A-204ENST00000463684 MAST3O60307 1309 aa18.25■□□□□ 0.51
SMC1A-204ENST00000463684 PDHXO00330 501 aa18.25■□□□□ 0.51
SMC1A-204ENST00000463684 MIGA2Q7L4E1 593 aa18.25■□□□□ 0.51
SMC1A-204ENST00000463684 SRCIN1Q9C0H9 1055 aa18.25■□□□□ 0.51
SMC1A-204ENST00000463684 A0A1B0GUL6 1792 aa18.25■□□□□ 0.51
SMC1A-204ENST00000463684 OSBPP22059 807 aa18.24■□□□□ 0.51
SMC1A-204ENST00000463684 GJA8P48165 433 aa18.24■□□□□ 0.51
SMC1A-204ENST00000463684 METTL24Q5JXM2 366 aa18.24■□□□□ 0.51
SMC1A-204ENST00000463684 APOBEC3HQ6NTF7 200 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms