RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ANKRD44Q8N8A2 993 aa19.28■□□□□ 0.68
SKA3-204ENST00000462482 SSH1Q8WYL5 1049 aa19.28■□□□□ 0.68
SKA3-204ENST00000462482 ELP3Q9H9T3 547 aa19.28■□□□□ 0.68
SKA3-204ENST00000462482 ZNF646O15015 1829 aaPredicted RBP19.28■□□□□ 0.68
SKA3-204ENST00000462482 SSC5DA1L4H1 1573 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 MAST3O60307 1309 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 AOX1Q06278 1338 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 PUM3Q15397 648 aaKnown RBP19.27■□□□□ 0.68
SKA3-204ENST00000462482 HOOK2Q96ED9 719 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 ERO1AQ96HE7 468 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 R3HDMLQ9H3Y0 253 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 TRIM17Q9Y577 477 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 CSADQ9Y600 493 aa19.27■□□□□ 0.68
SKA3-204ENST00000462482 IGF2BP3O00425 579 aaKnown RBP eCLIP19.26■□□□□ 0.67
SKA3-204ENST00000462482 WDHD1O75717 1129 aaPredicted RBP19.26■□□□□ 0.67
SKA3-204ENST00000462482 ALDH1L2Q3SY69 923 aa19.26■□□□□ 0.67
SKA3-204ENST00000462482 OPTNQ96CV9 577 aa19.26■□□□□ 0.67
SKA3-204ENST00000462482 SLC5A1P13866 664 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 BCAMP50895 628 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 MAP3K9P80192 1104 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 TMEM39BQ9GZU3 492 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 USP44Q9H0E7 712 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 SMC4Q9NTJ3 1288 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 HDAC5Q9UQL6 1122 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 SUGT1Q9Y2Z0 365 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 KIF16BQ96L93 1317 aa19.25■□□□□ 0.67
SKA3-204ENST00000462482 SLFN5Q08AF3 891 aa19.24■□□□□ 0.67
SKA3-204ENST00000462482 ARHGEF6Q15052 776 aa19.24■□□□□ 0.67
SKA3-204ENST00000462482 VGLL2Q8N8G2 317 aa19.24■□□□□ 0.67
SKA3-204ENST00000462482 KLHDC4Q8TBB5 520 aa19.24■□□□□ 0.67
SKA3-204ENST00000462482 MRIQ9BWK5 157 aa19.24■□□□□ 0.67
SKA3-204ENST00000462482 EYA2O00167 538 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 SLC34A2O95436 690 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 GJA5P36382 358 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 GTF2A2P52657 109 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 CRHR2Q13324 411 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 LPIN2Q92539 896 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 TEPSINQ96N21 525 aa19.23■□□□□ 0.67
SKA3-204ENST00000462482 TESPA1A2RU30 521 aaPredicted RBP19.22■□□□□ 0.67
SKA3-204ENST00000462482 UBTFL1P0CB47 393 aaPredicted RBP19.22■□□□□ 0.67
SKA3-204ENST00000462482 INTS3Q68E01 1043 aaKnown RBP19.22■□□□□ 0.67
SKA3-204ENST00000462482 OTOP1Q7RTM1 612 aa19.22■□□□□ 0.67
SKA3-204ENST00000462482 WDR66Q8TBY9 1149 aa19.22■□□□□ 0.67
SKA3-204ENST00000462482 ZDHHC15Q96MV8 337 aa19.22■□□□□ 0.67
SKA3-204ENST00000462482 CCL15-CCL14A0A0B4J2E2 113 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 SP3Q02447 781 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 VGLL4Q14135 290 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 GRIK5Q16478 980 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 CCL15Q16663 113 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 FKBP1CQ5VVH2 108 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 DCAF15Q66K64 600 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.21■□□□□ 0.67
SKA3-204ENST00000462482 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.21■□□□□ 0.67
SKA3-204ENST00000462482 EFCC1Q9HA90 598 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 ZFYVE28Q9HCC9 887 aa19.21■□□□□ 0.67
SKA3-204ENST00000462482 GNL3LQ9NVN8 582 aaKnown RBP19.21■□□□□ 0.67
SKA3-204ENST00000462482 CACNB3P54284 484 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 PRPF38BQ5VTL8 546 aaKnown RBP19.2■□□□□ 0.66
SKA3-204ENST00000462482 HHIPL2Q6UWX4 724 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 FAM83AQ86UY5 434 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 CD99L2Q8TCZ2 262 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 OTUD5Q96G74 571 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 CEP126Q9P2H0 1117 aa19.2■□□□□ 0.66
SKA3-204ENST00000462482 CT47B1P0C2W7 299 aaPredicted RBP19.19■□□□□ 0.66
SKA3-204ENST00000462482 FGFR2P21802 821 aa19.19■□□□□ 0.66
SKA3-204ENST00000462482 TAF1CQ15572 869 aaPredicted RBP19.19■□□□□ 0.66
SKA3-204ENST00000462482 CDAN1Q8IWY9 1227 aa19.19■□□□□ 0.66
SKA3-204ENST00000462482 WRNIP1Q96S55 665 aa19.19■□□□□ 0.66
SKA3-204ENST00000462482 PTPN18Q99952 460 aa19.19■□□□□ 0.66
SKA3-204ENST00000462482 API5Q9BZZ5 524 aaKnown RBP19.19■□□□□ 0.66
SKA3-204ENST00000462482 FBXO3Q9UK99 471 aa19.19■□□□□ 0.66
SKA3-204ENST00000462482 MS4A4AQ96JQ5 239 aa19.18■□□□□ 0.66
SKA3-204ENST00000462482 SIL1Q9H173 461 aa19.18■□□□□ 0.66
SKA3-204ENST00000462482 PTPN22Q9Y2R2 807 aa19.18■□□□□ 0.66
SKA3-204ENST00000462482 A0A1B0GUL6 1792 aa19.18■□□□□ 0.66
SKA3-204ENST00000462482 SPDYE5A6NIY4 337 aa19.17■□□□□ 0.66
SKA3-204ENST00000462482 CETPP11597 493 aa19.17■□□□□ 0.66
SKA3-204ENST00000462482 RFX5P48382 616 aaPredicted RBP19.17■□□□□ 0.66
SKA3-204ENST00000462482 ATP2B3Q16720 1220 aa19.17■□□□□ 0.66
SKA3-204ENST00000462482 APOBEC3HQ6NTF7 200 aaKnown RBP19.17■□□□□ 0.66
SKA3-204ENST00000462482 ERO1BQ86YB8 467 aa19.17■□□□□ 0.66
SKA3-204ENST00000462482 BRI3BPQ8WY22 251 aa19.17■□□□□ 0.66
SKA3-204ENST00000462482 CIAO1O76071 339 aa19.16■□□□□ 0.66
SKA3-204ENST00000462482 SNAPC2Q13487 334 aa19.16■□□□□ 0.66
SKA3-204ENST00000462482 CNKSR2Q8WXI2 1034 aa19.16■□□□□ 0.66
SKA3-204ENST00000462482 CDCA7LQ96GN5 454 aa19.16■□□□□ 0.66
SKA3-204ENST00000462482 ZNF341Q9BYN7 854 aa19.16■□□□□ 0.66
SKA3-204ENST00000462482 IL15P40933 162 aaPredicted RBP19.15■□□□□ 0.66
SKA3-204ENST00000462482 KIF22Q14807 665 aa19.15■□□□□ 0.66
SKA3-204ENST00000462482 NOB1Q9ULX3 412 aaKnown RBP19.15■□□□□ 0.66
SKA3-204ENST00000462482 LDHBP07195 334 aaKnown RBP19.14■□□□□ 0.65
SKA3-204ENST00000462482 ATG9AQ7Z3C6 839 aa19.14■□□□□ 0.65
SKA3-204ENST00000462482 FAM151AQ8WW52 585 aa19.14■□□□□ 0.65
SKA3-204ENST00000462482 ZKSCAN4Q969J2 545 aaPredicted RBP19.14■□□□□ 0.65
SKA3-204ENST00000462482 ZCCHC17Q9NP64 241 aaKnown RBP19.14■□□□□ 0.65
SKA3-204ENST00000462482 DENND2AQ9ULE3 1009 aa19.14■□□□□ 0.65
SKA3-204ENST00000462482 SNCAIPQ9Y6H5 919 aa19.14■□□□□ 0.65
SKA3-204ENST00000462482 ECM29Q5VYK3 1845 aa19.14■□□□□ 0.65
SKA3-204ENST00000462482 SEMA3EO15041 775 aa19.13■□□□□ 0.65
SKA3-204ENST00000462482 PPIL2Q13356 520 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms