RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 NALCNQ8IZF0 1738 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 NWD1Q149M9 1564 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 DLC1Q96QB1 1528 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 NEURL1BA8MQ27 555 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 CELA2BP08218 269 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-205ENST00000462254 MPSTP25325 297 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 ZAP70P43403 619 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 INSM1Q01101 510 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-205ENST00000462254 ZNF468Q5VIY5 522 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-205ENST00000462254 SYT9Q86SS6 491 aa6.35□□□□□ -1.39
CSMD3-205ENST00000462254 CMTR1Q8N1G2 835 aaKnown RBP6.35□□□□□ -1.39
CSMD3-205ENST00000462254 PTPRUQ92729 1446 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 YTHDC2Q9H6S0 1430 aaKnown RBP6.34□□□□□ -1.39
CSMD3-205ENST00000462254 METP08581 1390 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 ARAFP10398 606 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 ERCC5P28715 1186 aaPredicted RBP6.34□□□□□ -1.39
CSMD3-205ENST00000462254 FKBP4Q02790 459 aaKnown RBP eCLIP6.34□□□□□ -1.39
CSMD3-205ENST00000462254 TMEM132EQ6IEE7 984 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 GIMAP6Q6P9H5 292 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 GPR152Q8TDT2 470 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 ASB16Q96NS5 453 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 KCNMB2Q9Y691 235 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 EID1Q9Y6B2 187 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 TULP4Q9NRJ4 1543 aa6.34□□□□□ -1.39
CSMD3-205ENST00000462254 TECPR2O15040 1411 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 NPHP4O75161 1426 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-205ENST00000462254 ADGRB2O60241 1585 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 ICMTO60725 284 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 SASH3O75995 380 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 BCRP11274 1271 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 EPB42P16452 691 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 NPR3P17342 541 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 EIF1AXP47813 144 aaKnown RBP6.33□□□□□ -1.4
CSMD3-205ENST00000462254 HSPA2P54652 639 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 CCINQ13939 588 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 TRIP4Q15650 581 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-205ENST00000462254 ECM1Q16610 540 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 TSNAXIP1Q2TAA8 658 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 DPH6Q7L8W6 267 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 KRT25Q7Z3Z0 450 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 FCHSD1Q86WN1 690 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 SVOPQ8N4V2 548 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 ABTB2Q8N961 1025 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 BHMTQ93088 406 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 ZFATQ9P243 1243 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 TOPAZ1Q8N9V7 1692 aa6.33□□□□□ -1.4
CSMD3-205ENST00000462254 LRPPRCP42704 1394 aaKnown RBP6.32□□□□□ -1.4
CSMD3-205ENST00000462254 ST20-MTHFSA0A0A6YYL1 179 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 SHISA8B8ZZ34 492 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 H3BRB1 525 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 OIP5O43482 229 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 ARHGEF15O94989 841 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 NFKB1P19838 968 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 TARSP26639 723 aaKnown RBP6.32□□□□□ -1.4
CSMD3-205ENST00000462254 ADH6P28332 368 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 TAGLNQ01995 201 aaKnown RBP6.32□□□□□ -1.4
CSMD3-205ENST00000462254 NOP9Q86U38 636 aaKnown RBP6.32□□□□□ -1.4
CSMD3-205ENST00000462254 ANKLE2Q86XL3 938 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 GALNT6Q8NCL4 622 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 TESK2Q96S53 571 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 TUT1Q9H6E5 874 aaKnown RBP6.32□□□□□ -1.4
CSMD3-205ENST00000462254 TRAK1Q9UPV9 953 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 ITSN1Q15811 1721 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 FMN2Q9NZ56 1722 aa6.32□□□□□ -1.4
CSMD3-205ENST00000462254 EIF3AQ14152 1382 aaKnown RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 DISP3Q9P2K9 1392 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 AKAP12Q02952 1782 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 SCAMP3O14828 347 aaKnown RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 XYLBO75191 536 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 FAM13AO94988 1023 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 DNM1Q05193 864 aaKnown RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 SF3B2Q13435 895 aaKnown RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 SLCO4C1Q6ZQN7 724 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 ZSCAN29Q8IWY8 852 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 GOLGA6L1Q8N7Z2 621 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 EDARADDQ8WWZ3 215 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 NUDT16Q96DE0 195 aaKnown RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 SLC26A8Q96RN1 970 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 AVENQ9NQS1 362 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 GDF2Q9UK05 429 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.31□□□□□ -1.4
CSMD3-205ENST00000462254 USP32Q8NFA0 1604 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 ABCC11Q96J66 1382 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 CCDC7Q96M83 1385 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 PLEKHH1Q9ULM0 1364 aa6.31□□□□□ -1.4
CSMD3-205ENST00000462254 WASHC2AQ641Q2 1341 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 FZD6O60353 706 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 SIN3BO75182 1162 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 EPXP11678 715 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 MAPK1P28482 360 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 ARHGAP4P98171 946 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 HDLBPQ00341 1268 aaKnown RBP6.3□□□□□ -1.4
CSMD3-205ENST00000462254 MRPL58Q14197 206 aaKnown RBP6.3□□□□□ -1.4
CSMD3-205ENST00000462254 PIK3R5Q8WYR1 880 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 EDEM1Q92611 657 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 PNMA5Q96PV4 448 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 MDFIQ99750 246 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 BACH2Q9BYV9 841 aa6.3□□□□□ -1.4
CSMD3-205ENST00000462254 IGFLR1Q9H665 355 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms