RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ITGBL1O95965 494 aaPredicted RBP27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 PRDX5P30044 214 aa27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 CRKP46108 304 aa27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 MTMR14Q8NCE2 650 aa27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 TEKT1Q969V4 418 aa27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 ZNF512BQ96KM6 892 aaPredicted RBP27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 GLIS2Q9BZE0 524 aaPredicted RBP27.96■■■□□ 2.07
CCDC28B-203ENST00000461819 MYO1BO43795 1136 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 HSPA6P17066 643 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 SPTY2D1Q68D10 685 aaPredicted RBP27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 CDC37L1Q7L3B6 337 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 KRT26Q7Z3Y9 468 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 SNRKQ9NRH2 765 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 PCDHAC2Q9Y5I4 1007 aa27.95■■■□□ 2.06
CCDC28B-203ENST00000461819 MAST2Q6P0Q8 1798 aa27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 MYO5AQ9Y4I1 1855 aaKnown RBP27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 SPDYE2BA6NHP3 402 aa27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 SPDYE6P0CI01 402 aa27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 HDLBPQ00341 1268 aaKnown RBP27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 SULF1Q8IWU6 871 aa27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 ZBED3Q96IU2 234 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 RWDD1Q9H446 243 aaPredicted RBP27.94■■■□□ 2.06
CCDC28B-203ENST00000461819 PASKQ96RG2 1323 aa27.93■■■□□ 2.06
CCDC28B-203ENST00000461819 PITPNM2Q9BZ72 1349 aa27.93■■■□□ 2.06
CCDC28B-203ENST00000461819 USP48Q86UV5 1035 aa27.93■■■□□ 2.06
CCDC28B-203ENST00000461819 DZIP1Q86YF9 867 aaKnown RBP27.93■■■□□ 2.06
CCDC28B-203ENST00000461819 ZBTB47Q9UFB7 747 aaPredicted RBP27.93■■■□□ 2.06
CCDC28B-203ENST00000461819 TRAF5O00463 557 aa27.92■■■□□ 2.06
CCDC28B-203ENST00000461819 CENPBP07199 599 aaPredicted RBP27.92■■■□□ 2.06
CCDC28B-203ENST00000461819 ERICH6Q7L0X2 663 aa27.92■■■□□ 2.06
CCDC28B-203ENST00000461819 GCC1Q96CN9 775 aa27.92■■■□□ 2.06
CCDC28B-203ENST00000461819 PRMT6Q96LA8 375 aaPredicted RBP27.92■■■□□ 2.06
CCDC28B-203ENST00000461819 ADM5C9JUS6 153 aa27.91■■■□□ 2.06
CCDC28B-203ENST00000461819 APLP1P51693 650 aa27.91■■■□□ 2.06
CCDC28B-203ENST00000461819 TBC1D9Q6ZT07 1266 aa27.91■■■□□ 2.06
CCDC28B-203ENST00000461819 ZAP70P43403 619 aa27.9■■■□□ 2.06
CCDC28B-203ENST00000461819 APOBEC3FQ8IUX4 373 aaKnown RBP27.9■■■□□ 2.06
CCDC28B-203ENST00000461819 CLRN2A0PK11 232 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 DIXDC1Q155Q3 683 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 HHIPL2Q6UWX4 724 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 ZDHHC15Q96MV8 337 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 MRIQ9BWK5 157 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 RAI14Q9P0K7 980 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 LRP2BPQ9P2M1 347 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 SCAF8Q9UPN6 1271 aaKnown RBP27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 DOCK2Q92608 1830 aa27.89■■■□□ 2.06
CCDC28B-203ENST00000461819 FMR1Q06787 632 aaKnown RBP eCLIP27.88■■■□□ 2.05
CCDC28B-203ENST00000461819 SLF2Q8IX21 1173 aa27.88■■■□□ 2.05
CCDC28B-203ENST00000461819 VEZTQ9HBM0 779 aa27.88■■■□□ 2.05
CCDC28B-203ENST00000461819 CYP2E1P05181 493 aaPredicted RBP27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 ANKRD45Q5TZF3 282 aa27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 GPATCH3Q96I76 525 aa27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 TDRD3Q9H7E2 651 aaKnown RBP27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 ZNF408Q9H9D4 720 aa27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 AOX1Q06278 1338 aa27.87■■■□□ 2.05
CCDC28B-203ENST00000461819 MECOMQ03112 1051 aa27.86■■■□□ 2.05
CCDC28B-203ENST00000461819 DAGLAQ9Y4D2 1042 aa27.86■■■□□ 2.05
CCDC28B-203ENST00000461819 NDUFB9Q9Y6M9 179 aa27.86■■■□□ 2.05
CCDC28B-203ENST00000461819 IGHDP01880 384 aa27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 SPDYE2Q495Y8 402 aa27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 DLK2Q6UY11 383 aa27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 DNAJC2Q99543 621 aaKnown RBP27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 ZNF70Q9UC06 446 aaPredicted RBP27.85■■■□□ 2.05
CCDC28B-203ENST00000461819 TMEM88BA6NKF7 163 aa27.84■■■□□ 2.05
CCDC28B-203ENST00000461819 CELF2O95319 508 aaKnown RBP27.84■■■□□ 2.05
CCDC28B-203ENST00000461819 GSTO1P78417 241 aa27.84■■■□□ 2.05
CCDC28B-203ENST00000461819 TMOD2Q9NZR1 351 aa27.84■■■□□ 2.05
CCDC28B-203ENST00000461819 ATP5JP18859 108 aa27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 APOBEC3HQ6NTF7 200 aaKnown RBP27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 NSUN4Q96CB9 384 aaKnown RBP27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 CDCA5Q96FF9 252 aa27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 PIH1D3Q9NQM4 214 aaKnown RBP27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 ECHDC1Q9NTX5 307 aa27.83■■■□□ 2.05
CCDC28B-203ENST00000461819 TNFAIP1Q13829 316 aa27.82■■■□□ 2.04
CCDC28B-203ENST00000461819 SMC5Q8IY18 1101 aa27.82■■■□□ 2.04
CCDC28B-203ENST00000461819 BOLA2Q9H3K6 86 aa27.82■■■□□ 2.04
CCDC28B-203ENST00000461819 CREBZFQ9NS37 354 aa27.82■■■□□ 2.04
CCDC28B-203ENST00000461819 MROH7-TTC4A0A0A0MT08 1334 aa27.82■■■□□ 2.04
CCDC28B-203ENST00000461819 IDH1O75874 414 aaKnown RBP27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 HTRA3P83110 453 aa27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 TTF1Q15361 905 aaPredicted RBP27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 B4GALNT3Q6L9W6 998 aa27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 ANTXR1Q9H6X2 564 aa27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 GAKO14976 1311 aa27.81■■■□□ 2.04
CCDC28B-203ENST00000461819 MYH7P12883 1935 aa27.8■■■□□ 2.04
CCDC28B-203ENST00000461819 GOLIM4O00461 696 aa27.8■■■□□ 2.04
CCDC28B-203ENST00000461819 LDHCP07864 332 aa27.8■■■□□ 2.04
CCDC28B-203ENST00000461819 NAA16Q6N069 864 aaPredicted RBP27.8■■■□□ 2.04
CCDC28B-203ENST00000461819 DEFB129Q9H1M3 183 aa27.8■■■□□ 2.04
CCDC28B-203ENST00000461819 TCP10L2B9ZVM9 353 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 NEFLP07196 543 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 TNNI2P48788 182 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 CACNB3P54284 484 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 PRAMEF18Q5VWM3 479 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 CST9Q5W186 159 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 ZNF384Q8TF68 577 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 ABT1Q9ULW3 272 aaKnown RBP27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 PPP2R3BQ9Y5P8 575 aa27.79■■■□□ 2.04
CCDC28B-203ENST00000461819 BTDP43251 543 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms